BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921441
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23850.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1489 0.0
> AT1G23850.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23840.1);
Has 47 Blast hits to 40 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8425739-8427235
REVERSE LENGTH=1497
Length=1497
Score = 1489 bits (806), Expect = 0.0
Identities = 1014/1112 (91%), Gaps = 23/1112 (2%)
Strand=Plus/Plus
Query 7 AACTGCT-AAAGGAGATGAAGATCGAGGAGGATCTAGGTTACATCAACGTACTCAAACGA 65
||||| | |||| |||||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct 177 AACTG-TGAAAGAAGATGAAGATTGAGGAGGATCTAGGTTTCATCAACATACTCAAACGA 235
Query 66 GCAACAAAGCTTCTATGGGGTAACATCAAtctcgttctcttcctctgcctttgctctctc 125
||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||
Sbjct 236 GCAACAAAGCTTCTATGTGGTAACATCAATCTTGTTCTCTTCCTCTTCCTTTGCTCTCTC 295
Query 126 cctctcttttgtttcttgatcttcttcgagctctcactcCAAACCACTGTCTCACTCGCT 185
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 296 CCCCTCTTTTGTTTCTTGATCTTCTTCGAGCTTTCACTCCAAACCACTGTCTCACTCGCT 355
Query 186 TCTCAATACCTCGTTCGACAACTCAATAATTGGAATTACTACTACGTTCCTCGAGTTGCT 245
||||||||||||||||||||||||| ||||||| |||||||||||||||||| || ||||
Sbjct 356 TCTCAATACCTCGTTCGACAACTCACTAATTGGGATTACTACTACGTTCCTCAAGATGCT 415
Query 246 GCCTTGTCGGAGAATCTGCTTCCATTGCTTATCCAGACATTTCTACTCTACTTGTTCCCG 305
|| | | |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TCCGTCTTGGAGAATCTGATTCCATTGCTTATCCAGACATTTCTACTCTACTTGTTCCCG 475
Query 306 TACAGCCTTC-TAGACCTCCTCACCACCACCATAATGGTCTCCGCATCTTGGATTGTTCA 364
||| ||| || |||||||| |||||||||||| ||| ||||| |||||||||| ||||||
Sbjct 476 TACGGCC-TCATAGACCTCTTCACCACCACCACAATAGTCTCTGCATCTTGGACTGTTCA 534
Query 365 CACGTCCGG-GGAGGAACCGTTAAGGTTCGGTCAATTGGTTCGGAGAACCGTAGAGATAT 423
||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 535 CACGT-CGGAGGAGGAACCGTTAAGGTTCGGTCAATTGGTTCGGAGAACGGTAGAGATAT 593
Query 424 GTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACATCCTTCTGATGTCAACCC 483
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 594 GTCAAAACAGACTTGAAGGTTGTCTGATCACCTCTCTGTACGTCCTTCTCTTGTCAACCC 653
Query 484 CTGTTCTCTTTGGTTTCTTCTTTGTAGCAACGAACTATTTCTACATCATTTCTCTGATCG 543
||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||
Sbjct 654 CTGTTTTCTTTGGCTTCTTATTTGTAGCAACGAACTATTTCCACATCATTTCTCTGACCG 713
Query 544 GATTAGGAGACTACTCACACTACTATTATATCAATC-TGGATGAAGATAG-CGGAGGTTA 601
||| ||| || ||||| ||||||||| ||| || | | || |||||| | || ||| ||
Sbjct 714 GATCAGGCGAAAACTCATACTACTATTCTAT-AAACATTGAAGAAGAT-GCCGAAGGCTA 771
Query 602 TTACAGAAGCAGCCGCT-TCGACGA-TCCGGTAAGGATGTTGTTTGATGCAGTTATGGCT 659
||||||||||||| | | || || | |||||||| ||||||||||||||| ||| | |||
Sbjct 772 TTACAGAAGCAGCAG-TGTCAAC-AGTCCGGTAAAGATGTTGTTTGATGCGGTTTTAGCT 829
Query 660 ATGTTTCATGGTGCTATCTTTCTCGTTTTGCTGGCGATGTTCAGCAAGTGGAGTGCGGGA 719
|||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 830 ATGTTTCACGGTGCTATCTTTCTCGGTTTACTGGCGATGTTCAGCAAGTGGAGTGCGGGA 889
Query 720 TGGAACATGGGTTTGGTTATCTCGGTGTTAGAAGAAGATCAAGAAGAA-GATCAAAACAT 778
|||||||||||||||||| | ||||||||||||| || ||||| || | ||||| |||
Sbjct 890 TGGAACATGGGTTTGGTTGTTTCGGTGTTAGAAG-AG--GAAGAA-AATGGTCAAAGCAT 945
Query 779 CTATGGAACCGATGCCCTGACGA-TCTCTGCTAAATATGGAAAAGGACATGAGAAGCGCG 837
||||||||||||||| |||| | | ||| |||| ||||||||||||||||||||||| |
Sbjct 946 ATATGGAACCGATGCCTTGAC-ACTGTCTTCTAACTATGGAAAAGGACATGAGAAGCGTG 1004
Query 838 GTCTCCAAGTGATGCTGGTGTTCTTGGTCTTCGTTATTGCGATGAGGATGCCGTGTTTTT 897
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1005 GTCTCCAAGTGATGCTGGTGTTCTTGGTCTTCGCTATTGCGATGAGGATGCCATGTTTTT 1064
Query 898 GCTTCAAATGCACTGAGAGTTCGAATGGAAATAGAGTGTTGTACACGAGTCTCTATGTGG 957
| ||||||||||| |||||||| |||||||| |||||||||||||||||| |||||||||
Sbjct 1065 GTTTCAAATGCACGGAGAGTTCCAATGGAAACAGAGTGTTGTACACGAGTTTCTATGTGG 1124
Query 958 GTTTGATCTGTGTTGGGAATATGATCAAATGGGTGGCTTGTGTAGTGTTTTATGAAGATT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTTTGATCTGTGTTGGGAATATGATCAAATGGGTGGCTTGTGTAGTGTTTTATGAAGATT 1184
Query 1018 GTAGAACCAAG-GTTTTGGAGAAGAAAGGTGATGTGGAGATTGGATCAAAAGCTAAGACT 1076
||||||| | | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1185 GTAGAACTA-GCGTTTTGGAGAAGAAAGGTGATGTGGAGATTGGATCAAAAGGTAAGACT 1243
Query 1077 TTTGCTGTATAGATAAATTGTCTTAGATCAAA 1108
|||| || ||||||||||||||||||||||||
Sbjct 1244 TTTGTTGCATAGATAAATTGTCTTAGATCAAA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5