BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921459
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24040.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1504 0.0
> AT1G24040.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr1:8503777-8506795 REVERSE LENGTH=1398
Length=1398
Score = 1504 bits (814), Expect = 0.0
Identities = 933/990 (94%), Gaps = 9/990 (1%)
Strand=Plus/Plus
Query 2 AATCGTCTCTGTGTGTGTCAATGGCGGCCTTAAGCATCTCACTCGCTTTCTCTGTTGATT 61
|||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 23 AATCGTGTGTGTGTGTGTCAATGGCGGCTTTAAGCATCTCACTAGCTTTCTCTGTTGATT 82
Query 62 CTCTTAAACCAAGCCAATCAACGAAGTTTGGTTTCTCGTCTTCTTCTCCTAGATATCCAT 121
|||| ||||||| |||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 83 CTCTCAAACCAACCCAATCAACGAAGTTTGGCTTCTCGTCTTCTTCACATAGATATCCAT 142
Query 122 TACTCTATTCGTGTAGATCTCACCGCTCCAATCTCAGATTCGCTTACCCTCCTTCTTCGG 181
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 143 TACTCTACTCGTGTAAATCTCACCGCTCCAATCTCAGATTCGCTTTCCCTCCTTCTTCAG 202
Query 182 TTTCGACAGCTACAGAAACTGGAGAAG-AAGCTGCGAAATCTACC-GGAAGCTACGCGTT 239
||||||||||||||||||||||||||| || || | ||||| ||| |||| ||||||||
Sbjct 203 TTTCGACAGCTACAGAAACTGGAGAAGAAAACT-CTAAATCGACCGGGAA-TTACGCGTT 260
Query 240 TCTAGAGGAATCGTTTCGTACTGGGAGGTTTTTGAGTAACGATGAGTTAGAGAAG-TTGA 298
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
Sbjct 261 TCTAGAGGAATCGTTTCGTACCGGGAGGTTTTTGAGTAACGATGAGTTAGAGAAGCTT-A 319
Query 299 AAACTCTTGAAGGGTTTGCGTATTTTCAGGAGCTTGAATCTGGATCGATGTGGGTTCGGG 358
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 320 AAACTCTTGAAGGATTTGCGTATTTTCAAGAGCTTGAATCTGGATCGATGTGGGTTCGAG 379
Query 359 TTATGAGACATGAAGAGATGGATTCAACGGTGCATCTATTGGCTGAGTCATTTGGTGAAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TTATGAGACATGAAGAGATGGATTCAACGGTGCATCTATTGGCTGAGTCATTTGGTGAAT 439
Query 419 CGATGTTATTGCCTTCTGGTTATCAATCTGTGTTACGGTTTTTGGTTAAGCAGTATTTGA 478
|||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 440 CGATGTTATTACCTTCTGGTTATCAGTCTGTGTTACGGTTTTTGATTAAGCAGTATTTGA 499
Query 479 TTGAGAGGAGAGAAGTGTTGCCACACTCAGTTACTTTAGTTGGGTTCTTTAGGAAAAAAG 538
||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 500 TTGAGAGAAGAGAAGTGTTGCCACACGCAGTTACTTTAGTTGGTTTCTTTAGGAAAAAAG 559
Query 539 TTGATGGGTTTAGTGATGATGGAGAGGAGGAGGCTGAGATGGCTGGAACGGTTGAGGTTT 598
|||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 560 TTGATGAGTTTAGTGATGATGGAGAGGAGGAGGCTGTGATGGCTGGAACTGTTGAGGTTT 619
Query 599 GTTTGGATAAACGAGGCGCTAATGCTTCGCCTCCTTCTCCAACTCCTCCTAAGGAATCAC 658
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 620 GTTTGGAGAAACGAGGCGCTAATGCTTCTCCTCCTTCTCCAACTCCTCCTAAGGAATCAC 679
Query 659 CTTATATTTGCAACATGACTGTGAAAGAGGATCTTAGAAGGAGGGGAATTGGGTGGCATT 718
||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 680 CTTATATCTGTAACATGACTGTCAAAGAGGATCTTAGAAGGAGAGGAATTGGGTGGCATT 739
Query 719 TGTTGAAGGCGAGTGAGGAATTGATATCTCAGATTAGTCCATCAAAAGATGTATACTTGC 778
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 740 TGTTGAAGGCGAGTGAGGAACTGATATCTCAGATTAGTCCATCAAAAGATGTATACTTGC 799
Query 779 ATTGTAGGATGGTGGATGAGGCTCCTTTCAATATGTACAAGAAAGCAGGATACGAGGTTG 838
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 800 ATTGTAGGATGGTTGATGAGGCTCCTTTCAATATGTACAAGAAGGCAGGATACGAGGTTG 859
Query 839 TTAAGACAGATACTGTTTTGGTCCTTTTGATGTTACAGCGGCGTAAACATTTGATGCGCA 898
||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
Sbjct 860 TTAAGACAGATACAGTTTTGGTCCTTCTGATGTTACAGCGGCGTAAGCATTTGATGCGGA 919
Query 899 A-AAAG--CTTCCACTATGCACCACCCCTACAGTAGAAATTGTGGGGTCTGATAATGAGC 955
| ||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||
Sbjct 920 AGAAACTTCTTCCACTATGCACCAATCCTATAGTAGAAATGGTGGGGTCTGATAATGAGC 979
Query 956 TGACCTCCTCTGCAAATGTGTAAACATGGG 985
||||||||||||||||||||||||||||||
Sbjct 980 TGACCTCCTCTGCAAATGTGTAAACATGGG 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5