BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921463
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin sy... 337 9e-92
> AT4G31180.1 | Symbols: | Class II aminoacyl-tRNA and biotin
synthetases superfamily protein | chr4:15155879-15159589 FORWARD
LENGTH=2126
Length=2126
Score = 337 bits (182), Expect = 9e-92
Identities = 228/250 (91%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 342 ATAATGGACCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATAACAAATGC 401
|||||||| |||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1297 ATAATGGATCTTGTGGACGAGTTATTTGTGTTTATATTCACTAGTTTGAATGAGAGGTGC 1356
Query 402 AAAAAGGAACTTG-AAGCTATTGGAAAACAATACCCATTTAAACCTTTGAAGTTTCTTG- 459
||||| ||||| | ||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct 1357 AAAAAAGAACT-GCAAGCTGTTGGAAAGCAATACCCATTTGAACCTTTGAAGTTTCTACC 1415
Query 460 AAAAGACATTGAGGTTAACGTTTGAAGAAGGGATTCAAATTCTTAAGGAAGCTGGTGTGG 519
|||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1416 AAAA-ACATTGAGGTTAACGTTTGAAGAAGGGGTTCAAATGCTTAAGGAAGCTGGTGTGG 1474
Query 520 AGATTGATCCTCTTGGCGATCTAAACACTGAATCTCAGAGAAAACTTGGCCAACTTGTAC 579
|| |||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||
Sbjct 1475 AGGTTGATCCTCTTGGCGATCTAAACACTGAATCTGAGAGAAAACTAGGCCAGCTTGTAT 1534
Query 580 TGGAAAAGTA 589
||||||||||
Sbjct 1535 TGGAAAAGTA 1544
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29386975995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5