BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921468
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24100.1 | Symbols: UGT74B1 | UDP-glucosyl transferase 74B1 ... 2217 0.0
> AT1G24100.1 | Symbols: UGT74B1 | UDP-glucosyl transferase 74B1
| chr1:8525435-8527087 REVERSE LENGTH=1572
Length=1572
Score = 2217 bits (1200), Expect = 0.0
Identities = 1355/1430 (95%), Gaps = 9/1430 (1%)
Strand=Plus/Plus
Query 1 CTCTGCTTCTTTGAGC-AACAACAATGGCGGAAACAACTCCCAAACTCAAAGGCCACGTC 59
||||||||| |||||| || ||||||||||||||||||||||||| | ||||||||||||
Sbjct 55 CTCTGCTTCGTTGAGCTAA-AACAATGGCGGAAACAACTCCCAAAGTGAAAGGCCACGTC 113
Query 60 GTAATCTTACCTTACCCAGTTCAAGGCCACCTAAACCCAATGGTTCAATTCGCTAAACGT 119
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GTAATCTTACCATACCCAGTTCAAGGCCACCTAAACCCAATGGTTCAATTCGCTAAACGT 173
Query 120 CTAGTCTCCAAAAACGTCAAAGTCACAATCGCCACCACTACCTACACCGCTTCCTCAATC 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 174 CTAGTCTCCAAAAACGTCAAAGTCACAATCGCCACCACTACCTACACCGCCTCCTCAATC 233
Query 180 ACAACTCCATCAGTCTCCGTCGAACCAATCTCCGACGGATTCGATTTCATCCCCATTGGT 239
||||| |||||| |||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 234 ACAACACCATCACTCTCCGTCGAACCAATCTCCGATGGATTCGATTTCATCCCCATAGGT 293
Query 240 ATCCCCGGTTTCAGCGTCGATACTTACTCAGAATCCTTCAAGCTCCACGGATCCGAAACC 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 294 ATCCCCGGTTTCAGCGTCGATACTTACTCAGAATCCTTCAAGCTCAACGGATCCGAAACC 353
Query 300 CTAACTCTCCTAATCGAGAAATTCAAATCCACAGATTCACCAATCGATTGTTTAGTCTAT 359
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 354 CTAACTCTCCTAATCGAGAAATTCAAATCCACAGATTCACCAATCGATTGCTTAATCTAC 413
Query 360 GATTCGTTTCTTCCTTGGGGACTTGAAGTTGCTAGATCTATGGATGTTTCAGCTGCTTCT 419
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 414 GATTCGTTTCTTCCTTGGGGACTTGAAGTTGCTAGATCTATGGAACTTTCAGCTGCTTCT 473
Query 420 TTCTTCACTAACAATCTCACTGTTTGTTCTGTGTTGCGTAAATTCTCTAACGGTGAGTTT 479
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 TTCTTCACTAATAATCTCACTGTTTGTTCTGTGTTGCGTAAATTCTCTAACGGTGACTTT 533
Query 480 CCTCTTCCCGCTGATCCTAATTCGGCGCGGTTTCG-AGTCCGTGGCTTGCCGTCTTTGAG 538
|||||||||||||||||||||||||||| |||||| | |||||||||| |||||||||||
Sbjct 534 CCTCTTCCCGCTGATCCTAATTCGGCGCCGTTTCGTA-TCCGTGGCTTACCGTCTTTGAG 592
Query 539 CTACGACGAGTTACCTTCGTTTGTGGGGCGTCATTGGTTGACTCATCCGGAGCATGGGAG 598
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||
Sbjct 593 CTACGATGAGTTACCTTCGTTTGTGGGACGTCATTGGTTGACTCATCCTGAGCATGGCAG 652
Query 599 AGTTCTTTTGAATCAGTTTCCTAACCATGAAAATGCTGATTGGTTATTCGTTAATGGCTT 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 AGTTCTTCTGAATCAGTTTCCTAACCATGAAAATGCTGATTGGTTATTCGTTAATGGCTT 712
Query 659 CGAAGGTTTAGAAGAAACACAAGATTGCGAAAATGGTGAGTTTGAGGCAATGAGGGCAAC 718
||||| |||||||||||||||||||| ||||||||||||| ||| ||||||| ||| ||
Sbjct 713 TGAAGGGTTAGAAGAAACACAAGATTGTGAAAATGGTGAGTCTGATGCAATGAAGGCGAC 772
Query 719 GTTGATCGGACCGATGATTCCATCGGCTTACCTTGATGATCGGATAAGA-GATGATAAAG 777
|||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct 773 GTTGATCGGACCGATGATTCCATCGGCTTATCTTGATGATCGGATG-GAAGATGATAAAG 831
Query 778 ACTATGGGGCGAGTCTTTTGAAACCGATATCGAAGGAATGTATGGAGTGGCTTGGGACTA 837
||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |||||
Sbjct 832 ACTATGGTGCGAGTCTGTTGAAACCGATATCGAAGGAGTGTATGGAGTGGCTTGAGACTA 891
Query 838 AGCCGGCTCAGTCGGTAGCATTTGTTTCGTTTGGTTCGTTTGGGATTCTGTTTGAGAAGC 897
||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 892 AGCAGGCTCAGTCAGTAGCATTTGTTTCGTTTGGTTCGTTTGGGATTCTCTTTGAGAAGC 951
Query 898 AGCTCGCGGAGGTAGCGATTGCTCTACGAGAATCGGATTTGAACTTCTTGTGGGTGATTA 957
| || || |||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 952 AACTTGCAGAGGTAGCTATTGCGCTACAAGAATCGGATTTGAACTTCTTGTGGGTGATTA 1011
Query 958 AAGAAGCTCATATCGCGAAATTGCCAGAAGGGTTTGTGGAATCGACTAAAGACAGAGCGT 1017
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1012 AAGAAGCTCATATAGCGAAATTGCCTGAAGGGTTTGTGGAATCGACTAAAGATAGAGCCT 1071
Query 1018 TGTTGGTTTCTTGGTGTAACCAGCTTGAGGTATTAGCTCATGAATCGATCGGTTGCTTTT 1077
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1072 TGTTGGTTTCTTGGTGTAACCAGCTTGAGGTTTTAGCTCATGAATCGATAGGTTGCTTTT 1131
Query 1078 TGACTCATTGTGGTTGGAACTCGACATTGGAAGGGTTGAGTTTGGGCGTTCCGATGGTTG 1137
|||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 1132 TGACTCATTGTGGTTGGAACTCTACGTTGGAAGGGTTGAGTTTGGGAGTTCCGATGGTTG 1191
Query 1138 GTGTGCCTCAGTGGAGTGATCAGATGAATGATGCTAAGTTTGTGGAGGACGTTTGGAAAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 GTGTGCCTCAGTGGAGTGATCAGATGAATGATGCTAAGTTTGTGGAGGAAGTTTGGAAAG 1251
Query 1198 TTGGGTATAGAGCTAAAGAGGAAGCTGGCGAAGTAATTGTGAAGAGCGAAGAATTGGTGA 1257
||||||||||||| |||||||||||||| |||||||| |||||||| |||||||||||||
Sbjct 1252 TTGGGTATAGAGCGAAAGAGGAAGCTGGGGAAGTAATCGTGAAGAGTGAAGAATTGGTGA 1311
Query 1258 GGTGTTTGAAAGGAGTGATGGAAGGAGACAGTAGTGTGAAGATTAGAGAAAGTTCGAAGA 1317
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1312 GGTGTTTGAAAGGAGTGATGGAAGGAGAGAGTAGTGTGAAGATTAGAGAGAGTTCGAAGA 1371
Query 1318 AGTGGAAAGATTTGGCTGTGAAGGCAATGAGTGAAGGAGGAAGCTCTGATCGGAGCATTA 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1372 AGTGGAAAGATTTGGCTGTGAAGGCAATGAGTGAAGGAGGAAGCTCTGATCGAAGCATTA 1431
Query 1378 ACGAGTTTATAGAGAGTTTAGTGAAGAAACATT---GATTTAACTTTGTA 1424
||||||||||||||||||||| |||| |||||| |||| |||||||||
Sbjct 1432 ACGAGTTTATAGAGAGTTTAGGGAAGTAACATTATTGATTCAACTTTGTA 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5