BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921469
Length=1022
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24110.1 | Symbols: | Peroxidase superfamily protein | chr1... 1474 0.0
> AT1G24110.1 | Symbols: | Peroxidase superfamily protein | chr1:8527838-8528818
FORWARD LENGTH=981
Length=981
Score = 1474 bits (798), Expect = 0.0
Identities = 921/982 (94%), Gaps = 2/982 (0%)
Strand=Plus/Plus
Query 21 ATGAAATCTTTTGGTTTATGTCTGTTTATTCTCCTATCTTCTCCATATATCCTTCAAGCC 80
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1 ATGAAATCTTTTGGTTTATGTCTGTTTATTCTCGTATCTTCTCCATGTCTCCTTCAAGCC 60
Query 81 AATCTCTCGTCTGATTATTACACCAAAACATGTCCTGAATTCGAGCAAACACTCGTCCAA 140
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 61 AATCTCTCGTCTGATTATTACACCAAAACATGTCCTGAATTCGAGGAAACACTCGTACAA 120
Query 141 ATCGTCACCGATAAACAAATCGCAGCTCCAACAACAGCCG-CAGGAACACTCCGTCTCTT 199
|||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||
Sbjct 121 ATCGTCACCGATAAACAAATTGCAGCTCCAACAACAGCTGTC-GGAACACTCCGTCTCTT 179
Query 200 TTTCCACGATTGCATGGTCGATGGCTGTGACGCCTCAATCCTCGTTGCTTCTACTCCACG 259
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TTTCCACGATTGCATGGTTGATGGCTGCGACGCCTCAATCCTCGTTGCTTCTACTCCACG 239
Query 260 TAAAACCTCTGAACGTGACGCAGATATCAACCATTCTCTACCTGGAGACGCATTCGACGT 319
||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||
Sbjct 240 TAAAACCTCCGAACGTGACGCCGATATCAACCGTTCTCTTCCTGGAGACGCATTCGACGT 299
Query 320 AATCACACGTATCAAAACCGCCGTAGAACTCAAATGTCCCAACGTCGTTTCTTGCTCTGA 379
|||||||||||||||||||||||| || || |||||||| ||| | ||||||||||| ||
Sbjct 300 AATCACACGTATCAAAACCGCCGTCGAGCTAAAATGTCCAAACATTGTTTCTTGCTCCGA 359
Query 380 CATTCTCGTTGGTGCAACACGTAGCTTGGTCACAATGGTCGGAGGTCCGAGAATTAACGT 439
|| |||||||||||||||||||| || || |||||||||||||||||||| |||||||
Sbjct 360 TATCCTCGTTGGTGCAACACGTAGTTTAATCTCAATGGTCGGAGGTCCGAGAGTTAACGT 419
Query 440 TAAGTTCGGTCGGAAAGATAGTCTTGTCTCTGATATGAACCGTGTTGAAGGAAAGCTAGC 499
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 420 TAAGTTCGGTCGGAAAGATAGTCTTGTCTCTGATATGAATCGTGTTGAAGGAAAACTAGC 479
Query 500 TCGACCTAACATGACTATGGATCATATCATTTCGATTTTTGAATCTAGTGGTCTGACAGT 559
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||
Sbjct 480 TCGACCTAACATGACTATGGATCATATCATTTCTATTTTCGAGTCTAGTGGTCTGACCGT 539
Query 560 TCAAGAAATGGTTGCTCTTGTTGGTGCTCACACGATTGGTTTCTCTCATTGCAAAGAGTT 619
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 TCAAGAAATGGTTGCTCTTGTTGGTGCTCACACCATTGGTTTCTCTCATTGCAAAGAGTT 599
Query 620 TGCGAGTCGGATCTTTAACAAGTCCGATCAAAACGGTCCGGTGGAGATGAATCCGAAATA 679
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 600 CGCGAGTCGGATCTTTAACAAGTCTGATCAAAATGGTCCGGTGGAGATGAATCCGAAATA 659
Query 680 CGCTGCGGAGCTGAGGAAGCTGTGTGCGAATTACACCAAGGACGAAGAAATGTCTGCGTT 739
||| ||||||||||||||| ||||||||||||||||||| || ||| | |||||||||||
Sbjct 660 CGCGGCGGAGCTGAGGAAGTTGTGTGCGAATTACACCAATGATGAACAGATGTCTGCGTT 719
Query 740 TAATGATGTTTTTACCCCTGGAAAATTTGACAACATGTACTACAAGAATTTGAAGCATGG 799
|||||| |||||||| || || |||||||| || ||||| ||||||||||||||||| ||
Sbjct 720 TAATGACGTTTTTACTCCAGGGAAATTTGATAATATGTATTACAAGAATTTGAAGCACGG 779
Query 800 TTACGGGTTGCTCCAGTCGGATCACGCGATTGCGTTTGATAACAGGACGCGGTCGCTGGT 859
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 780 TTACGGGTTGCTCCAGTCCGATCACGCGATTGCGTTTGACAACAGGACGCGCTCGCTGGT 839
Query 860 GGATCTTTACGCAGAGAACGAAACGGCGTTCTTTGACGCGTTTGCGAAGGCAATGGAGAA 919
|||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 GGATCTTTACGCGGAGGACGAAACGGCGTTCTTTGACGCGTTTGCGAAGGCTATGGAGAA 899
Query 920 AGTTAGTGAGAAGAATGTGAAGACGGGGAAGCTTGGAGAAGTAAGAAGACGGTGTGATCA 979
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 900 AGTTAGTGAGAAGAATGTGAAGACGGGGAAGCTTGGAGAAGTAAGAAGGCGGTGTGATCA 959
Query 980 ATACAATGACTACAAGGGGTAA 1001
|||||||||||||||||| |||
Sbjct 960 ATACAATGACTACAAGGGATAA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50083444559
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5