BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921472
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24140.1 | Symbols: | Matrixin family protein | chr1:853604... 1700 0.0
> AT1G24140.1 | Symbols: | Matrixin family protein | chr1:8536045-8537387
REVERSE LENGTH=1343
Length=1343
Score = 1700 bits (920), Expect = 0.0
Identities = 1115/1209 (92%), Gaps = 14/1209 (1%)
Strand=Plus/Plus
Query 1 TTTTAATCTTTTTGTTTCAAATGATGAGGATTTATGTTTCCGTGGTTTTCTTGGTGTTCT 60
||||||| ||| | ||| ||| ||||||||| ||||| | ||||||||||| ||||||
Sbjct 83 TTTTAATATTTCTCTTTTGGATGGTGAGGATTTGTGTTTTCATGGTTTTCTTGTTGTTCT 142
Query 61 TTGTTCCTTCTCCAGTCTCTGCTGGTTTCTACCCCAACTCCTCAGCCATTCCGCCGGAGC 120
| | ||||||||||||||| ||||||||||| | ||||||||||||||||||||| |||
Sbjct 143 TCGCTCCTTCTCCAGTCTCCGCTGGTTTCTATACAAACTCCTCAGCCATTCCGCCGCAGC 202
Query 121 TTCTCCGTAACGCCACCGGAAACCCCTGGAACTCATTCTTGAATTTCACCGGATGTCATG 180
||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 203 TTCTCCGAAACGCCACCGGGAACCCCTGGAACTCATTCTTGAATTTCACTGGATGTCACG 262
Query 181 CCGGCAAGAAATACGATGGTCTCTACAAGCTTAAACAATATTTCCAACATTTTGGCTACA 240
|||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct 263 CCGGCAAGAAGTACGATGGTCTCTATATGCTCAAACAATATTTTCAACATTTTGGCTACA 322
Query 241 TCCCCAAAACTGATCTCTCCGGAAACTTCACAGACGACTTCGACGATATCCTCAAGAACG 300
|| || ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 323 TCACCGAAACTAATCTCTCCGGAAACTTCACTGACGACTTCGACGATATTCTCAAGAACG 382
Query 301 CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 383 CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA 442
Query 361 CTCTCAAACACGTCGTGATCCCGCGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA 420
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 443 CTCTCAAACACGTTGTGATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA 502
Query 421 CTATGCATAGCGGTAGAAAAACCTTCGAGGTCTCCTTCGCCGGGCGGGGACAACACTTCC 480
|||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct 503 CTATGCATAGCGGTAGGAAAACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGCTTCC 562
Query 481 ACACTGTCAAACACTACTCTTTCTTCCCCGGTGAGCCACGGTGGCCGAGAAATCGCCGTG 540
|| | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 563 ACGCCGTTAAACACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTG 622
Query 541 ATCTAACATACGCTTTCGACCCGCGAAACTCGTTGACAGAAGAGGTCAAGAGTGTGTTCT 600
||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 623 ATCTAACCTACGCTTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCT 682
Query 601 CACGCGCGTTCGCTCGTTGGGCGGAGGTGACTCCACTAACGTTCACGCGCGTGGAAAGGT 660
||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct 683 CACGCGCTTTCACTCGTTGGGAGGAGGTGACTCCACTAACGTTCACACGCGTGGAGAGGT 742
Query 661 TCTCGACCTCCGACATAAGCATCGGATTCTACTCCGGCGAACACGGCGACGGAGAACCAT 720
|||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| |
Sbjct 743 TCTCGACCTCTGACATCAGCATCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGT 802
Query 721 TTGACGGCCCAATGAGAACGCTAGCACACGCATTCTCGCCCCCGACAGGATACTTCCACC 780
| |||||||||||||||||||||||||| || |||||||||||||| ||| ||||||| |
Sbjct 803 TCGACGGCCCAATGAGAACGCTAGCACATGCGTTCTCGCCCCCGACGGGACACTTCCATC 862
Query 781 TAGACGGAGAAGAGAACTGGATCGTCTCCGGTGAAGGAGGCGACGGTTTTATCTCCGTCG 840
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 863 TAGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGT-G 921
Query 841 A-TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATCGGACATCTTCTAGGGTTA 899
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 922 TCTGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTA 981
Query 900 GGCCATTCCTCGGTGGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGACGTAAA 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 982 GGCCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAA 1041
Query 960 GTTGCTTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGGGAATCCTAAC 1019
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1042 GTTGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAAC 1101
Query 1020 TTTAACGGCTCTAGATCTCCATCACCGTCTACTCAACAACGAGACACTGGCGATTCCGGT 1079
|| || || |||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1102 TTCAATGGTTCTAGATCTCCACCACCGTCCACTCAACAACGAGACACTGGCGATTCTGGT 1161
Query 1080 GCTGCTGGTAGAAACGACGGTTCTAGATCGGTTTTGACTAATCTACTTCTGTATTAT--- 1136
||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1162 GCTCCTGGTAGAAGCGACGGTTCTAGATCGGTTTTGACTAATCTACTTCAGTATTATTTT 1221
Query 1137 ---ATT-T----GGATTATTTTCGTATTTAGTGTAGATGATTGGATTAGTTCAT-AATTT 1187
||| | |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1222 TGGATTATATTTGGATTATTTTTGTATTTAGTGTAGATGATTGGATTAGTTCATTAATTT 1281
Query 1188 ACAGATTAT 1196
|||||||||
Sbjct 1282 ACAGATTAT 1290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5