BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921475
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24147.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 490 4e-138
> AT1G24147.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24148.1); Has
4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:8542446-8543474
FORWARD LENGTH=628
Length=628
Score = 490 bits (265), Expect = 4e-138
Identities = 328/358 (92%), Gaps = 6/358 (2%)
Strand=Plus/Plus
Query 27 TGTTTTCGCTTCATGTGGATGAAGCTCTTGGTGCTCAAACTAAAATCAGCAAACTCAAAG 86
||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 123 TGTTTTCACTTCATGTGGATGAAGCTCTTGGTGCTCAAACTAAGATCCGCAAACTCAAAG 182
Query 87 AGATGATCACGATGCGGAGGAATTTGGAAGGAAATATTGACTACAAAAGCTCTAATATGC 146
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||
Sbjct 183 AGATGATCACGATGCGGAGGAATTTGGAAGGCAATATTGACTACAGAAGCTCTAAAAGGC 242
Query 147 GGACTGGAGGGAGTGTATCGAATCAATGCCACAGCAAAAGTTATATCGAGATCGTCACCA 206
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 243 GGACTGGAGGGAGTGTATCAAATCAATGCCGCAGTAAAAGTTATATCGAGATCGTCACCA 302
Query 207 CTTATCTTCCTGA-T--GAT--T-CGTCCTCCCCCTGTATACAGTGTAACCACGACTCTT 260
||||||||||||| | ||| | ||||| ||||||||||| ||||||||||||||| ||
Sbjct 303 CTTATCTTCCTGAATCTGATGATTCGTCCGCCCCCTGTATAAAGTGTAACCACGACTATT 362
Query 261 GTTATAGTTGCACCAAGACCAGAAAGTGCATATGGTCCACTGGCTCACCCCGGAGGTGCA 320
||||||||||||||||||||||| |||||| | ||||||||||||||||| ||| |||||
Sbjct 363 GTTATAGTTGCACCAAGACCAGACAGTGCACACGGTCCACTGGCTCACCCTGGACGTGCA 422
Query 321 CAGTCAACGAGGTGTGTTGCCTTATAGTGTATTCATAGCTATAGATTTATCAGAGGCA 378
| |||| |||| |||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 423 CCGTCACCGAGTTGTGTTGCCTTATAGTATATTCATAGCTTTAGATTTATCGGAGGCA 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17794783146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5