BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921476 Length=470 Score E Sequences producing significant alignments: (Bits) Value AT1G24148.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 460 4e-129 > AT1G24148.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24147.1). | chr1:8544250-8545551 FORWARD LENGTH=912 Length=912 Score = 460 bits (249), Expect = 4e-129 Identities = 290/310 (94%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 160 GAAGAGACGATGGTGATGAGGTGGAACTTGGAAGGCAATGGCTTCGTAACTTCCAAAATA 219 ||||||||||||||||||||| ||||| | |||| |||||||||||||| ||||||||| Sbjct 380 GAAGAGACGATGGTGATGAGGAGGAACAAGAAAGGTAATGGCTTCGTAACCTCCAAAATA 439 Query 220 GATGCTCCACCAAGCGCATCGA-GACATTGCGGGGGAGGTAAACGTTTTGAGAACATGGC 278 |||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||| Sbjct 440 GATGTTCCACCAAGCGCATC-ACAACATTGCGGGGGAGGTAAACGTTTTAAGAACATGGC 498 Query 279 GACCATTGATCGTCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGACTCGTCCTCCCT 338 ||||| | |||| |||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 499 GACCACTAATCGCCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGTCTCTTCCTCCCT 558 Query 339 CTGTATAAGGTGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCCCCACCCTCGAC 398 ||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 559 CTGTATAAGATGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCGCCACGCTCGAC 618 Query 399 GTACACGTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA 458 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 619 GTACACTTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA 678 Query 459 TAACTTTGAA 468 |||||||||| Sbjct 679 TAACTTTGAA 688 Score = 152 bits (82), Expect = 3e-36 Identities = 112/125 (90%), Gaps = 8/125 (6%) Strand=Plus/Plus Query 6 AGAGAGAATTATTAAGATGTTGTTGTTGTCGTCTACAGTTTCTTTCATGCTATTTTTTCT 65 ||||||| ||||||||| |||||| |||||| ||||||||||||||| ||||||||| Sbjct 264 AGAGAGATTTATTAAGA---TGTTGTCGTCGTCAACAGTTTCTTTCATGTTATTTTTTC- 319 Query 66 TCTCCTTGTGTTATCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA 125 || | ||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 320 -CT-CATGT-TT-TCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA 375 Query 126 ACTCG 130 ||||| Sbjct 376 ACTCG 380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22354195415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5