BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921476

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24148.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   460    4e-129


> AT1G24148.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G24147.1). 
| chr1:8544250-8545551 FORWARD LENGTH=912
Length=912

 Score =  460 bits (249),  Expect = 4e-129
 Identities = 290/310 (94%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  160  GAAGAGACGATGGTGATGAGGTGGAACTTGGAAGGCAATGGCTTCGTAACTTCCAAAATA  219
            ||||||||||||||||||||| |||||  | |||| |||||||||||||| |||||||||
Sbjct  380  GAAGAGACGATGGTGATGAGGAGGAACAAGAAAGGTAATGGCTTCGTAACCTCCAAAATA  439

Query  220  GATGCTCCACCAAGCGCATCGA-GACATTGCGGGGGAGGTAAACGTTTTGAGAACATGGC  278
            |||| ||||||||||||||| |  ||||||||||||||||||||||||| ||||||||||
Sbjct  440  GATGTTCCACCAAGCGCATC-ACAACATTGCGGGGGAGGTAAACGTTTTAAGAACATGGC  498

Query  279  GACCATTGATCGTCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGACTCGTCCTCCCT  338
            ||||| | |||| |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  499  GACCACTAATCGCCATGATGATCAGTTCAGTCCACTTCCAGGAGGCGTCTCTTCCTCCCT  558

Query  339  CTGTATAAGGTGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCCCCACCCTCGAC  398
            ||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct  559  CTGTATAAGATGCGTTACCACCCAACGTTGTGTAGGGGCCGTAGGCGCGCCACGCTCGAC  618

Query  399  GTACACGTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA  458
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  619  GTACACTTGCACTATCATCTCGAAACAGTGTGAAAATATACCTGGCCATTGATCAGGTCA  678

Query  459  TAACTTTGAA  468
            ||||||||||
Sbjct  679  TAACTTTGAA  688


 Score =  152 bits (82),  Expect = 3e-36
 Identities = 112/125 (90%), Gaps = 8/125 (6%)
 Strand=Plus/Plus

Query  6    AGAGAGAATTATTAAGATGTTGTTGTTGTCGTCTACAGTTTCTTTCATGCTATTTTTTCT  65
            ||||||| |||||||||   |||||| |||||| ||||||||||||||| ||||||||| 
Sbjct  264  AGAGAGATTTATTAAGA---TGTTGTCGTCGTCAACAGTTTCTTTCATGTTATTTTTTC-  319

Query  66   TCTCCTTGTGTTATCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA  125
             || | ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  320  -CT-CATGT-TT-TCGATTCATATGAATGAAGCTCTTGGTGCTCAAATTGAAATCCGCAA  375

Query  126  ACTCG  130
            |||||
Sbjct  376  ACTCG  380



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5