BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921480
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold ... 2102 0.0
> AT1G24180.1 | Symbols: IAR4 | Thiamin diphosphate-binding fold
(THDP-binding) superfamily protein | chr1:8560525-8563495
REVERSE LENGTH=1547
Length=1547
Score = 2102 bits (1138), Expect = 0.0
Identities = 1203/1234 (97%), Gaps = 5/1234 (0%)
Strand=Plus/Plus
Query 1 TCTTAAAGCAAATCGGAGAGACTCCGGCGATGGCGTTATCACGACTTTCTTCGCGATCCA 60
||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||
Sbjct 86 TCTAAAAGCAAATCGGAGAG-CTTCGGCGATGGCGTTATCACGACTTTCTTCACGATCCA 144
Query 61 ACACTTTCTTAAAGCCGGCGATCACCGCTTTGCCCTCCTCCATCCGCCGTCATGTTTCCA 120
|||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 145 ACACTTTCCTAAAGCCGGCGATTACCGCCTTGCCCTCCTCCATCCGCCGTCATGTTTCCA 204
Query 121 CAGATTCATCACCGATCACAATCGAAACCGCCGTCCCTTTCGCATCGCATCTATGTGAAT 180
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 205 CAGACTCATCACCGATCACAATCGAAACCGCCGTCCCTTTCACATCGCATCTATGTGAAT 264
Query 181 CGCCGTCACGCTCCGTCGAGACTTCATCGGAGGAGATCTTAGCGTTTTTCCGTGACATGG 240
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 265 CACCGTCACGCTCCGTCGAGACTTCATCGGAGGAGATCTTAGCCTTTTTCCGTGACATGG 324
Query 241 CTCGGATGAGGAGGATGGAGATCGCAGCAGATTCTCTCTACAAGGCTAAGCTGATCCGTG 300
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 325 CTCGGATGAGGAGGATGGAGATCGCAGCAGATTCTCTTTACAAGGCGAAGCTGATCCGTG 384
Query 301 GATTCTGCCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTA 360
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GGTTCTGTCATTTGTACGATGGTCAAGAGGCTTTAGCGGTGGGAATGGAAGCGGCGATTA 444
Query 361 CCAAAAAAGATGCGATTATCACATCGTATCGTGATCACTGTACTTTCATTGGTCGTGGTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCAAAAAAGATGCGATTATCACATCGTATCGTGATCACTGTACTTTCATTGGTCGTGGTG 504
Query 421 GGAAGCTTGTTGATGCTTTCTCTGAGCTTATGGGAAGAAAAACTGGTTGTTCTCATGGTA 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 505 GGAAGCTTGTTGATGCTTTCTCTGAGCTTATGGGGAGAAAAACTGGTTGTTCTCATGGTA 564
Query 481 AAGGAGGATCTATGCATTTCTATAAGAAAGATGCTTCCTTTTATGGTGGACATGGGATTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 AAGGAGGATCTATGCATTTCTATAAGAAAGATGCTTCCTTTTATGGTGGACATGGGATTG 624
Query 541 TTGGTGCTCAGATTCCATTGGGATGTGGTTTGGCTTTTGCTCAGAAGTATAATAAGGATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGGTGCTCAGATTCCATTGGGATGTGGTTTGGCTTTTGCTCAGAAGTATAATAAGGATG 684
Query 601 AGGCTGTGACTTTTGCCTTGTATGGTGATGGTGCTGCGAATCAAGGACAGTTGTTTGAGG 660
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 685 AGGCTGTGACTTTTGCTTTGTATGGTGATGGTGCTGCGAATCAGGGACAGTTGTTTGAGG 744
Query 661 CCTTGAATATTTCGGCTTTATGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT 720
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CCTTGAACATTTCGGCTTTGTGGGATTTGCCTGCGATTCTTGTTTGCGAGAATAACCATT 804
Query 721 ATGGAATGGGAACGGCTACATGGAGATCGGCTAAGTCTCCGGCTTATTTCAAGCGTGGAG 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 805 ATGGAATGGGAACGGCTACATGGAGGTCGGCTAAGTCTCCGGCTTATTTCAAGCGTGGAG 864
Query 781 ATTATGTTCCTGGCTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAACAGGCGTGCA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ATTATGTTCCTGGCTTGAAGGTGGATGGTATGGATGCACTGGCTGTGAAACAGGCGTGCA 924
Query 841 AGTTTGCCAAGGAGCATGCTCTCAAGAATGGACCTATTATACTTGAGATGGACACTTACA 900
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 925 AGTTTGCCAAGGAGCATGCTCTCAAGAATGGTCCTATTATCCTTGAGATGGACACTTACA 984
Query 901 GATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 985 GATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCT 1044
Query 961 CTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 CTGGCGTGAGACAGGTGCGTGATCCAATTGAAAGGGTGCGAAAGTTGCTCTTAACTCATG 1104
Query 1021 ACATAGCTACAGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGAAAGAAGTAGATG 1080
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 ACATAGCTACCGAAAAAGAGCTTAAGGACATGGAGAAAGAGATAAGGAAAGAAGTAGATG 1164
Query 1081 ACGCTGTAGCTCAGGCTAAGGAGAGCCCTG-TACCAGATGCATCTGAGCTATTCACAAAC 1139
|||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1165 ACGCCGTAGCTCAGGCCAAGGAGAGCCC-GATACCAGATGCATCTGAGCTATTCACAAAC 1223
Query 1140 ATGTACGTGAAAGACTGCGGAGTTGAGTCATTTGGAGCAGACAGAAAAGAACTCAAAGTA 1199
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1224 ATGTACGTGAAAGACTGCGGAGTTGAGTCGTTTGGAGCAGACAGAAAAGAACTCAAAGTA 1283
Query 1200 ACACTTCCATA-AATCATTGCTTCCCAAGGAGAT 1232
||||||||||| |||| |||||||||||||||||
Sbjct 1284 ACACTTCCATAGAATC-TTGCTTCCCAAGGAGAT 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5