BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921492
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 281 4e-75
AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 228 5e-59
AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) super... 204 9e-52
AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) super... 141 7e-33
AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) super... 106 3e-22
> AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8417495-8418566 FORWARD LENGTH=726
Length=726
Score = 281 bits (152), Expect = 4e-75
Identities = 279/338 (83%), Gaps = 17/338 (5%)
Strand=Plus/Plus
Query 23 TGGAAGATGCG-ATGTCATACATCGAA-GCTGTGAGGGACGCATTGGAGGATGCTGAACC 80
||||||||| | | | ||||| || || ||||||| || |||||||||||| || |||||
Sbjct 35 TGGAAGATG-GAAAGGCATACGTC-AATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACC 92
Query 81 TGAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGATTTTG-GAGC-TGATAGAATCGG 137
|| ||||||| ||||||||||||| || ||||| ||| || ||| || || || ||
Sbjct 93 TGCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGA-GGTGATAGCGCGA-AGGATGGG 149
Query 138 TATAGCTGCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT-TC 196
||| ||| ||||||||||| |||| ||||| ||||||||||||||| || |||| | ||
Sbjct 150 TATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTC 208
Query 197 TTGGTTTCAATGTCTTCCTTCCACTTGAGTTTCAAATAACCATCCCTCTCGAGGCTAG-T 255
||||||| |||||| | ||| ||| ||||| ||| | | ||||||||| |||||||||
Sbjct 209 TTGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCG 268
Query 256 ACAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCAC--C-GAAGCCTGCCATGGAAGAT 312
| ||||||||||||||||||||||||||||||||||| | | ||||| |||| || |||
Sbjct 269 A-AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGAT 327
Query 313 GCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCA 350
||||||||||| ||||||||||| ||| ||||||||||
Sbjct 328 GCGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCA 365
Score = 169 bits (91), Expect = 3e-41
Identities = 112/122 (92%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 367 AGAATCGATGCTGCTATTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAAT 426
||| || |||| |||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 424 AGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGAAT 483
Query 427 CTTCTTCTTTG-TTTCTGTGTCTTCCTTTCAGCTACAAGGAGTTTTATCACGAAGCTTAA 485
|| ||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 484 CTGCTT-TTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTAA 542
Query 486 GG 487
||
Sbjct 543 GG 544
> AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9472077-9473149 FORWARD LENGTH=726
Length=726
Score = 228 bits (123), Expect = 5e-59
Identities = 274/344 (80%), Gaps = 21/344 (6%)
Strand=Plus/Plus
Query 25 GAAGATGCGATGTCATACATCGAAGCTGTGAGGGACGCATTGGAGGATGCTGAACCTGAA 84
||||||| |||| ||||| |||| ||||||| || ||||||| ||||| |||||||||||
Sbjct 37 GAAGATGGGATGGCATACTTCGATGCTGTGAAGGTCGCATTGCAGGATACTGAACCTGAA 96
Query 85 AAATATGAAGAGTTTCTAAGAACCTTTCTTGATTTTGGAGCTGATAGAATCGGTATAGCT 144
|||||| |||||||| |||||| |||| |||||| | ||| ||||| ||||| | |
Sbjct 97 AAATATCAAGAGTTTGTAAGAATCTTTATTGATTATACTGCTAATAGATTCGGTTTCGAA 156
Query 145 GCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCTTGGTTT 203
|||| ||||||||| | ||||||||| ||| |||||||| ||||||| | || |||||
Sbjct 157 ACTTTGAGTGCAAGCTTGCAGGAACTCCTGAGAGATCACGCGAATCTG-TGTCATGGTT- 214
Query 204 CAA-TGTCTTCCTTCCACTTGAGTTT-CAAATAACCATCCCTCTCGAGGCTAGTACAGAG 261
||| |||||| ||||| || || || || | | ||||||||| ||||||||| |||||
Sbjct 215 CAAATGTCTTACTTCCTTTT-AGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAG 273
Query 262 TTTCA--T-AA---GGTGGTTGGAAGAAGCGTACCACCGAAGC---C--TGCC-A---TG 306
||||| | || ||||||||||||||||||||||||| | | |||| | ||
Sbjct 274 TTTCACATCAATAAGGTGGTTGGAAGAAGCGTACCACCGGCGGTGGCGGTGCCTACCATG 333
Query 307 GAAGATGCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCA 350
|| ||||||||||| || |||| |||||| ||| ||||||||||
Sbjct 334 GATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCA 377
> AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8588442-8589546 REVERSE LENGTH=759
Length=759
Score = 204 bits (110), Expect = 9e-52
Identities = 225/278 (81%), Gaps = 18/278 (6%)
Strand=Plus/Plus
Query 23 TGGAAGATGCGATGTCATACATCGAA-GCTGT-GAGGGACGCATTGGAGG--ATGCTGAA 78
||||||||| | | ||||| || || ||||| || || ||||||| ||| ||| |||
Sbjct 35 TGGAAGATGTAAAGGCATACGTC-AATGCTGTGGA-GGTCGCATTGCAGGAAATG--GAA 90
Query 79 CCTGAAAAATAT-GAAGAGTTTCTAAGAAC-CTTTCTTGATTTTGGAGCTGATAGAATCG 136
|||| || || | ||| |||| |||| || ||||| || |||| |||| ||| ||||
Sbjct 91 CCTGCAAGATTTGGAA-TGTTTGTAAG-ACTCTTTCGTGGTTTTACAGCTCCTAGGATCG 148
Query 137 GTATAG-CTGCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT- 194
|||| | || ||||||||||| |||| ||||| ||||||||||||||| || |||| |
Sbjct 149 GTAT-GCCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TG 206
Query 195 TCTTGGTTTCAATGTCTTCCTTCCACTTGAGTTTCAAATAACCATCCCTCTCGAGGCTAG 254
||||||||| |||||||| ||||||| ||||| ||| ||||||| |||| |||||||||
Sbjct 207 TCTTGGTTTAAATGTCTTACTTCCACCTGAGTATCAGTTAACCATACCTCCCGAGGCTAG 266
Query 255 -TACAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCA 291
| ||||||||||||||||||||||||||||||||||
Sbjct 267 CGA-AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCA 303
Score = 174 bits (94), Expect = 7e-43
Identities = 114/123 (93%), Gaps = 4/123 (3%)
Strand=Plus/Plus
Query 367 AGAATCGATGCTGCTAT-TGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAA 425
||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 AGAGTCGATGCCGCT-TGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAA 515
Query 426 TCTTCTTCTTTG-TTTCTGTGTCTTCCTTTCAGCTACAAGGAGTTTTATCACGAAGCTTA 484
||| ||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 516 TCTGCTT-TTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTA 574
Query 485 AGG 487
|||
Sbjct 575 AGG 577
> AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:8584039-8585135 REVERSE LENGTH=738
Length=738
Score = 141 bits (76), Expect = 7e-33
Identities = 163/204 (80%), Gaps = 10/204 (5%)
Strand=Plus/Plus
Query 21 TATGGAAGATGCGATGTCATACATCGAA-GCTGTGAGGGACGCA-TTGGAGGATGCTGAA 78
||| || || |||| |||||||||| || ||||||| ||| ||| |||| || || | ||
Sbjct 33 TATTGATGAAGCGACGTCATACATC-AATGCTGTGAAGGAAGCATTTGG-GGCTGATCAA 90
Query 79 CCTGAAAAATAT-GAAGAGTTTCTAAGA-ACCTTTCTTGATTTTGGAGCTGATAGAATCG 136
|||| ||||||| | ||||||||| || | | | || ||||| ||||| ||||| |||
Sbjct 91 CCTGCAAAATATCG-AGAGTTTCT-CGACATCATGCTGGATTTAAGAGCTAATAGAGTCG 148
Query 137 GTATAGCTGCTTTCAG-TGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCTT 195
| ||||| | || | | |||| || | ||||||||||||||||||||||||||||||
Sbjct 149 ATTTAGCTACCGTC-GTTCCAAGGATGCGGGAACTCTTGAAAGATCACGTGAATCTGCTA 207
Query 196 CTTGGTTTCAATGTCTTCCTTCCA 219
||| ||||||||| ||||||||||
Sbjct 208 CTTCGTTTCAATGCCTTCCTTCCA 231
> AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily
protein | chr1:9466237-9467076 FORWARD LENGTH=561
Length=561
Score = 106 bits (57), Expect = 3e-22
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 485 AGGTCATTGATCTTCTCTATTATCATGAAGATTTGATTGACAAGTTCTTCAGATACTTTA 544
||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 488 AGGTCGTTGATCTTCTCTATTATCATGAAGATTTGATCGACAAGTTTTTCAGATTGTTTA 547
Query 545 ACATGAGAAAAT 556
||||||||||||
Sbjct 548 ACATGAGAAAAT 559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5