BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921492 Length=579 Score E Sequences producing significant alignments: (Bits) Value AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) super... 281 4e-75 AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) super... 228 5e-59 AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) super... 204 9e-52 AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) super... 141 7e-33 AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) super... 106 3e-22 > AT1G23810.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8417495-8418566 FORWARD LENGTH=726 Length=726 Score = 281 bits (152), Expect = 4e-75 Identities = 279/338 (83%), Gaps = 17/338 (5%) Strand=Plus/Plus Query 23 TGGAAGATGCG-ATGTCATACATCGAA-GCTGTGAGGGACGCATTGGAGGATGCTGAACC 80 ||||||||| | | | ||||| || || ||||||| || |||||||||||| || ||||| Sbjct 35 TGGAAGATG-GAAAGGCATACGTC-AATGCTGTGAAGGTCGCATTGGAGGAAGCGGAACC 92 Query 81 TGAAAAATATGAAGAGTTTCTAAGAAC-CTTTCTTGATTTTG-GAGC-TGATAGAATCGG 137 || ||||||| ||||||||||||| || ||||| ||| || ||| || || || || Sbjct 93 TGCAAAATATCAAGAGTTTCTAAG-ACTCTTTCATGA-GGTGATAGCGCGA-AGGATGGG 149 Query 138 TATAGCTGCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT-TC 196 ||| ||| ||||||||||| |||| ||||| ||||||||||||||| || |||| | || Sbjct 150 TATGGCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TGTC 208 Query 197 TTGGTTTCAATGTCTTCCTTCCACTTGAGTTTCAAATAACCATCCCTCTCGAGGCTAG-T 255 ||||||| |||||| | ||| ||| ||||| ||| | | ||||||||| ||||||||| Sbjct 209 TTGGTTTAAATGTCATGCTTGCACCTGAGTATCAGAGAGCCATCCCTCCCGAGGCTAGCG 268 Query 256 ACAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCAC--C-GAAGCCTGCCATGGAAGAT 312 | ||||||||||||||||||||||||||||||||||| | | ||||| |||| || ||| Sbjct 269 A-AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCACGTCCGGAGCCTACCATAGATGAT 327 Query 313 GCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCA 350 ||||||||||| ||||||||||| ||| |||||||||| Sbjct 328 GCGACTTCATACCTCATTGCTGTGAAGGAAGCATTTCA 365 Score = 169 bits (91), Expect = 3e-41 Identities = 112/122 (92%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 367 AGAATCGATGCTGCTATTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAAT 426 ||| || |||| |||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 424 AGAGTCAATGCCGCTAGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTCGAAT 483 Query 427 CTTCTTCTTTG-TTTCTGTGTCTTCCTTTCAGCTACAAGGAGTTTTATCACGAAGCTTAA 485 || ||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 484 CTGCTT-TTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTAA 542 Query 486 GG 487 || Sbjct 543 GG 544 > AT1G27270.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:9472077-9473149 FORWARD LENGTH=726 Length=726 Score = 228 bits (123), Expect = 5e-59 Identities = 274/344 (80%), Gaps = 21/344 (6%) Strand=Plus/Plus Query 25 GAAGATGCGATGTCATACATCGAAGCTGTGAGGGACGCATTGGAGGATGCTGAACCTGAA 84 ||||||| |||| ||||| |||| ||||||| || ||||||| ||||| ||||||||||| Sbjct 37 GAAGATGGGATGGCATACTTCGATGCTGTGAAGGTCGCATTGCAGGATACTGAACCTGAA 96 Query 85 AAATATGAAGAGTTTCTAAGAACCTTTCTTGATTTTGGAGCTGATAGAATCGGTATAGCT 144 |||||| |||||||| |||||| |||| |||||| | ||| ||||| ||||| | | Sbjct 97 AAATATCAAGAGTTTGTAAGAATCTTTATTGATTATACTGCTAATAGATTCGGTTTCGAA 156 Query 145 GCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT-TCTTGGTTT 203 |||| ||||||||| | ||||||||| ||| |||||||| ||||||| | || ||||| Sbjct 157 ACTTTGAGTGCAAGCTTGCAGGAACTCCTGAGAGATCACGCGAATCTG-TGTCATGGTT- 214 Query 204 CAA-TGTCTTCCTTCCACTTGAGTTT-CAAATAACCATCCCTCTCGAGGCTAGTACAGAG 261 ||| |||||| ||||| || || || || | | ||||||||| ||||||||| ||||| Sbjct 215 CAAATGTCTTACTTCCTTTT-AGGTTGCAGACAGCCATCCCTCCCGAGGCTAGCGCAGAG 273 Query 262 TTTCA--T-AA---GGTGGTTGGAAGAAGCGTACCACCGAAGC---C--TGCC-A---TG 306 ||||| | || ||||||||||||||||||||||||| | | |||| | || Sbjct 274 TTTCACATCAATAAGGTGGTTGGAAGAAGCGTACCACCGGCGGTGGCGGTGCCTACCATG 333 Query 307 GAAGATGCGACTTCATATCTCATTGCTGTCAAGAAAGCATTTCA 350 || ||||||||||| || |||| |||||| ||| |||||||||| Sbjct 334 GATGATGCGACTTCTTACCTCAATGCTGTGAAGGAAGCATTTCA 377 > AT1G24250.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8588442-8589546 REVERSE LENGTH=759 Length=759 Score = 204 bits (110), Expect = 9e-52 Identities = 225/278 (81%), Gaps = 18/278 (6%) Strand=Plus/Plus Query 23 TGGAAGATGCGATGTCATACATCGAA-GCTGT-GAGGGACGCATTGGAGG--ATGCTGAA 78 ||||||||| | | ||||| || || ||||| || || ||||||| ||| ||| ||| Sbjct 35 TGGAAGATGTAAAGGCATACGTC-AATGCTGTGGA-GGTCGCATTGCAGGAAATG--GAA 90 Query 79 CCTGAAAAATAT-GAAGAGTTTCTAAGAAC-CTTTCTTGATTTTGGAGCTGATAGAATCG 136 |||| || || | ||| |||| |||| || ||||| || |||| |||| ||| |||| Sbjct 91 CCTGCAAGATTTGGAA-TGTTTGTAAG-ACTCTTTCGTGGTTTTACAGCTCCTAGGATCG 148 Query 137 GTATAG-CTGCTTTCAGTGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCT- 194 |||| | || ||||||||||| |||| ||||| ||||||||||||||| || |||| | Sbjct 149 GTAT-GCCTACTTTCAGTGCACGCATGCAGGACCTCTTGAAAGATCACCCGAGTCTG-TG 206 Query 195 TCTTGGTTTCAATGTCTTCCTTCCACTTGAGTTTCAAATAACCATCCCTCTCGAGGCTAG 254 ||||||||| |||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| Sbjct 207 TCTTGGTTTAAATGTCTTACTTCCACCTGAGTATCAGTTAACCATACCTCCCGAGGCTAG 266 Query 255 -TACAGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCA 291 | |||||||||||||||||||||||||||||||||| Sbjct 267 CGA-AGAGTTTCATAAGGTGGTTGGAAGAAGCGTACCA 303 Score = 174 bits (94), Expect = 7e-43 Identities = 114/123 (93%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 367 AGAATCGATGCTGCTAT-TGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAA 425 ||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 457 AGAGTCGATGCCGCT-TGTGTCATTGCTAGGGTGGAGGAACTCATGAAAGATCACTTGAA 515 Query 426 TCTTCTTCTTTG-TTTCTGTGTCTTCCTTTCAGCTACAAGGAGTTTTATCACGAAGCTTA 484 ||| ||| |||| |||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 516 TCTGCTT-TTTGGTTTCTGTGTCTTCCTTTCAGCTACAACGAGTTTTACCACGAAGCTTA 574 Query 485 AGG 487 ||| Sbjct 575 AGG 577 > AT1G24230.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:8584039-8585135 REVERSE LENGTH=738 Length=738 Score = 141 bits (76), Expect = 7e-33 Identities = 163/204 (80%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 21 TATGGAAGATGCGATGTCATACATCGAA-GCTGTGAGGGACGCA-TTGGAGGATGCTGAA 78 ||| || || |||| |||||||||| || ||||||| ||| ||| |||| || || | || Sbjct 33 TATTGATGAAGCGACGTCATACATC-AATGCTGTGAAGGAAGCATTTGG-GGCTGATCAA 90 Query 79 CCTGAAAAATAT-GAAGAGTTTCTAAGA-ACCTTTCTTGATTTTGGAGCTGATAGAATCG 136 |||| ||||||| | ||||||||| || | | | || ||||| ||||| ||||| ||| Sbjct 91 CCTGCAAAATATCG-AGAGTTTCT-CGACATCATGCTGGATTTAAGAGCTAATAGAGTCG 148 Query 137 GTATAGCTGCTTTCAG-TGCAAGCATACAGGAACTCTTGAAAGATCACGTGAATCTGCTT 195 | ||||| | || | | |||| || | |||||||||||||||||||||||||||||| Sbjct 149 ATTTAGCTACCGTC-GTTCCAAGGATGCGGGAACTCTTGAAAGATCACGTGAATCTGCTA 207 Query 196 CTTGGTTTCAATGTCTTCCTTCCA 219 ||| ||||||||| |||||||||| Sbjct 208 CTTCGTTTCAATGCCTTCCTTCCA 231 > AT1G27240.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr1:9466237-9467076 FORWARD LENGTH=561 Length=561 Score = 106 bits (57), Expect = 3e-22 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 485 AGGTCATTGATCTTCTCTATTATCATGAAGATTTGATTGACAAGTTCTTCAGATACTTTA 544 ||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||| Sbjct 488 AGGTCGTTGATCTTCTCTATTATCATGAAGATTTGATCGACAAGTTTTTCAGATTGTTTA 547 Query 545 ACATGAGAAAAT 556 |||||||||||| Sbjct 548 ACATGAGAAAAT 559 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27829717438 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5