BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921495

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:...   418    1e-116
  AT2G18917.1 | Symbols:  | other RNA | chr2:8197114-8198103 FORW...   239    1e-62 


> AT2G18915.2 | Symbols: LKP2, ADO2 | LOV KELCH protein 2 | chr2:8194572-8197483 
REVERSE LENGTH=2284
Length=2284

 Score =  418 bits (226),  Expect = 1e-116
 Identities = 244/253 (96%), Gaps = 0/253 (0%)
 Strand=Plus/Plus

Query  1    GGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATG  60
            ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  221  GGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATG  280

Query  61   AAGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTA  120
            ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct  281  AAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTA  340

Query  121  GTCTTCCTGGAACGGCGCCGTGTGGTTTTGTGGTCAGCGATGCTCTTGAACCTGATAACC  180
            |||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct  341  GTCTTCCTGGCACGGCGCCGTGTGGGTTTGTGGTCAGCGATGCTCTTGAACCTGACAACC  400

Query  181  CTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAGGAAGTTA  240
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  401  CTATCATTTATGTTAACACTGTTTTTGAGATTGTTACTGGTTATCGAGCTGAAGAAGTTA  460

Query  241  TTGGTCGAAATTG  253
            |||||||||||||
Sbjct  461  TTGGTCGAAATTG  473


> AT2G18917.1 | Symbols:  | other RNA | chr2:8197114-8198103 FORWARD 
LENGTH=831
Length=831

 Score =  239 bits (129),  Expect = 1e-62
 Identities = 143/150 (95%), Gaps = 0/150 (0%)
 Strand=Plus/Minus

Query  1    GGGTGTGTAAGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGGGGAGATG  60
            ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  150  GGGTGTGTATGCAAAATCAAATGGAGTGGGATAGTGATTCCGATCTCAGCGGTGGAGATG  91

Query  61   AAGTGGCGGAGGATGGATGGTTCGGCGGAGGTAACAGAGCGATTCCGTTTCCGGTAGGTA  120
            ||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||
Sbjct  90   AAGTGGCGGAGGATGGATGGTTCGGTGGAGATAACGGAGCGATTCCGTTTCCGGTAGGTA  31

Query  121  GTCTTCCTGGAACGGCGCCGTGTGGTTTTG  150
            |||||||||| |||||||||||||| ||||
Sbjct  30   GTCTTCCTGGCACGGCGCCGTGTGGGTTTG  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5