BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921503
Length=1927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27210.1 | Symbols: | ARM repeat superfamily protein | chr1... 3081 0.0
> AT1G27210.1 | Symbols: | ARM repeat superfamily protein | chr1:9455368-9458026
REVERSE LENGTH=2288
Length=2288
Score = 3081 bits (1668), Expect = 0.0
Identities = 1844/1928 (96%), Gaps = 16/1928 (1%)
Strand=Plus/Plus
Query 3 CTCAAATCGGaaaaaaaaaTGTCGGTTCACGGACGATTTCCGGCGAGTCCACCGATTTCA 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 92 CTCAAATCGGAAAAAAAAATGTCGGTTCACGGACGATTTCCGGCGAGTCCACCGATTTCA 151
Query 63 TTATCTCCGTCGTCTTCTTCCACATCTCCGTCGTCGCAGTCACCGTCAACACCACCTGAT 122
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 152 TTATCTCCGTCGTCTTCTTCCACATCTCCGTCTTCACAGTCACCGTCAACACCACCTGAT 211
Query 123 CTAAAGCAACGAGTCATCGCTTGTCTCAACAAACTCGCTGATCGTGACACTTTAGCTCTC 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 212 CTAAAGCAACGAGTCATCGCTTGTCTCAACAAGCTCGCTGATCGTGACACTTTAGCTCTC 271
Query 183 GCTTCCGCTGAGCTTGACTCCATCGCTAGAAACCTAACTCACGATTCCTTCTCTTCGTTT 242
|||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 272 GCTTCCGCTGAGCTTGACTCAATCGCTAGAAACCTTACTCACGATTCCTTCTCTCCGTTT 331
Query 243 CTTAACTGTATCCATAACACTGACTCTTCCGTTAAATCTCCGGTGAGGAAACAGTGCGTT 302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 332 CTTAACTGTATCCACAACACTGACTCTTCCGTTAAATCTCCGGTGAGGAAACAGTGCGTT 391
Query 303 GCTCTCTTATCGGTTCTTTCTCGTTACCACGGCGATTCTCTCACGCCTCACCTTGCTAAG 362
||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 392 GCTCTTTTATCGGTTCTTTCTCGTTACCACGGAGATTCTCTAACACCTCACCTTGCTAAG 451
Query 363 ATGGTTTCAACTGTAATCCGCCGTCTCCGAGATCCGGATTCCTCAGTTCGCTCTGCTTGC 422
|||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||
Sbjct 452 ATGGTTTCAACTGTTATTCGCCGTCTCCGAGATCCGGATTCCTCCGTTCGCTCTGCTTGC 511
Query 423 GCCGTCGCGACGGCGGATATGTCGGCTCATGTTACGAGGCAGCCGTTTGCTTCCGTCGCG 482
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 512 GCCGTCGCGACGGCTGATATGTCGGCTCATGTTACGAGGCAGCCTTTTGCTTCCGTCGCG 571
Query 483 AAGCCGTTGATTGAGACGTTGATTCAGGAAGGTGATTCGAATCTGCAGATCGGAGCGGCG 542
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 AAGCCGTTGATTGAGACTTTGATTCAGGAAGGTGATTCGAATCTGCAGATCGGAGCGGCG 631
Query 543 TTGTGTTTAGCGGCGTCTGTTGAAGCGGCGACGGATCCGGAATCAGAGCAATTGAGGAAA 602
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 632 TTGTGTTTAGCGGCGTCTGTTGATGCGGCGACGGATCCGGAATCGGAGCAATTGAGAAAA 691
Query 603 TCGTTGCCTAAGATTGGGAAATTGCTTAAGAGTGATGGTTTTAAGGCTAAAGCTGCGTTG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TCGTTGCCTAAGATTGGGAAATTGCTTAAGAGTGATGGTTTTAAGGCTAAAGCTGCGTTG 751
Query 663 TTGAGTGCCGTCGGGAGTATAATTACCGCCGGTGGTGCGGGAACTAAACCGGTTTTGGAT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTGAGTGCCGTCGGGAGTATAATTACCGCCGGTGGTGCGGGAACTAAACCGGTTTTGGAT 811
Query 723 TGGTTAGTTCCGGTTTTGATTGAGTTTTTGAGTAGTGAGGATTGGGCGGCGAGGAAGTCT 782
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 812 TGGTTAGTTCCGGTTTTGATTGAGTTTTTGAGCAGTGAGGATTGGGCGGCGAGGAAGTCT 871
Query 783 GCGGCGGAGGCGTTGGGTAAAGTTGCGTCGGCGGAAGATTTGGCGTCACAGTATAAGAAG 842
||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 872 GCGGCTGAGGCGTTGGGTAAAGTTGCGACGGCGGAAGATTTGGCGTCGCAGTATAAGAAG 931
Query 843 ACTTGCACGACGGCTCTTGAGAGTAGAAGATTTGATAAGGTGAAAAGTGTTAGAGAAACT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 932 ACTTGCACGACGGCTCTTGAGAGTAGAAGATTTGATAAGGTGAAAAGTGTTAGAGAAACT 991
Query 903 ATGAATCGAGCATTGAATCTATGGAAGGAAGTTTCAAATGATGAAGAAGCTTCTTTATCT 962
|||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct 992 ATGAATAGAGCATTGAATCTGTGGAAGGAAGTTTCAACTGATGATGAAGCTTCTTTATCT 1051
Query 963 CCATCAAGATCTTCAACAGATGATGGTAGCATTGGATGCTTCTCTTCAGTCACGAGAAGT 1022
|||||||||||||||||||||||||||| |||||||||||| || || ||||||||||||
Sbjct 1052 CCATCAAGATCTTCAACAGATGATGGTAACATTGGATGCTTTTCCTCTGTCACGAGAAGT 1111
Query 1023 TCCACCATTGACGTTGGTTTAAAATCCGCTAGACCAAAGAAAGTAACGCCTATAATGAAG 1082
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1112 TCCACCATTGACGTTGGTTTAAAATCCGCTAGGCCAAAGAAAGTAACGCCTATAATGAAG 1171
Query 1083 AGGTCCCCATCTTTGCCTGTGAATAGGTCATATGCAGCAACTAGACAAAAAGAAAATCTT 1142
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1172 AGGTCCCCATCTTTGCCTGTGAATAGATCATATGCAGCAACTAGACAAAAAGAAAATCTT 1231
Query 1143 CCAAAAAGAAATCAAGGGAATATGACCATGTTAGCAGAAG---CCTCTAGTGTGGATAAC 1199
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1232 CCAAAAAGAAATCAAGGGAATATGACCATGTTAGTAGAAGAAGCCTCTAGTGTGGATAAC 1291
Query 1200 AAGGGACCACAATGTACGCCGCTAAAGAAATCTTCGGAAGAATCGGAAGAGAAGGATAAC 1259
||||||||||| | ||| ||| |||||||||||||||||||| | |||||||||| ||||
Sbjct 1292 AAGGGACCACATTTTACACCGGTAAAGAAATCTTCGGAAGAAACAGAAGAGAAGGCTAAC 1351
Query 1260 TCAGGGGGACCAGATATAATCAAACATACTATCTCTGAGAAAAGCCGGGAAGAGAGTAAA 1319
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1352 TCAGGGGGACCAGATATAATCAAACATACTATCTCTGAGAAAAGCAGGGAAGATAGTAAA 1411
Query 1320 GTATCGAGCTTTGGTGGTTTGAGGTCTGGCTCAAGGGTTGCACCTTGTAATGATGATGGT 1379
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1412 GTATCGAGCTTTGGTGGTTTGAGGTCTGGCTCAAGGGTTGCACCTTGTAGTGACGATGGT 1471
Query 1380 GATTCTTGTGATTCTGTAGTCAAGAACTGTAAAGATGATGTTGAAGAGAGCAAGAAAGAT 1439
|||||| || | | | ||| |||||||||||||||||||||||||||||||||
Sbjct 1472 GATTCT-GT-A------A---A-GAATTGTAAAGATGATGTTGAAGAGAGCAAGAAAGAT 1519
Query 1440 AGTGAGGAACTGTCTTTAATACGGGAACAGCTTGCTCTGATTGAGAACCAACAGTCCAGT 1499
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1520 AGTGAGGAACTGTCTTTGATACGGGAACAGCTTGCTCTGATTGAGAACCAACAGTCTAGT 1579
Query 1500 CTCTTAGACTTACTACAGAAATTCATGGGAACCTCACAGAGTGGCATCCAGTCTCTGGAG 1559
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1580 CTCTTAGACTTACTACAGAAATTCATGGGAACCTCACAGAGTGGAATTCAGTCTCTGGAG 1639
Query 1560 TCTCGTGTAAGCGGTCTAGAGATGGCGTTGGATGAAATATCAAGCGATCTGGCGGTTTCA 1619
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1640 TCTCGTGTAAGCGGTCTAGAGATGGCGTTGGATGAAATATCGTGCGATCTGGCGGTTTCA 1699
Query 1620 AACGGGAGAGTTCCTAGGAATAGTAGTAGCTGTGCAGGAGACAGTTGTTCCAAACTACCT 1679
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1700 AACGGGAGAGTTCCTAGGAATAGTAGTGGCTGCGCAGGAGACAGTTGTTCCAAACTACCT 1759
Query 1680 GGTACAGAGTTCTTAAGTCCCAAGTTCTGGAGGAAAACCGAGGAGAGACCACGGATTAGA 1739
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1760 GGTACAGAGTTCTTAAGTCCCAAGTTCTGGAGAAAAACCGAGGAGAGACCACGGAACAGA 1819
Query 1740 AACACAGCTAGTGAAATGGCTGCGTACGACCAGGGAATGCGAGAATCAACAGATGCAAAC 1799
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 1820 AACACAGCTAATGAAATGGCTGCGTACGACCAGGGGATGCGAGAATCAACAGATACGAAC 1879
Query 1800 AATGGTCAAAGAGGAGGTTCAGTTTTTCAAAAGAGATCACCAAGAGACCAGTTCCAAGAC 1859
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1880 AACGGTCAAAGAGGAGGTTCAGTTTTTCAAAAGAGATCACGAAGAGACCAGTTCCAAGAC 1939
Query 1860 TCTATGCATACAACACTACAGAAACCAACAACCAGATTATCTACTTGAAGCGAAAGAGGA 1919
| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| | |
Sbjct 1940 TGTATGCATACAACACTACAGAAACCAACCACCAGATTATCTACTTGAAGCAAAAGTG-A 1998
Query 1920 AAAGAGTG 1927
||||||||
Sbjct 1999 AAAGAGTG 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95431236045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5