BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921504
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27200.1 | Symbols: | Domain of unknown function (DUF23) | ... 2789 0.0
> AT1G27200.1 | Symbols: | Domain of unknown function (DUF23)
| chr1:9449549-9451750 REVERSE LENGTH=2202
Length=2202
Score = 2789 bits (1510), Expect = 0.0
Identities = 1690/1776 (95%), Gaps = 15/1776 (1%)
Strand=Plus/Plus
Query 1 GTTTCAATTTTTCTTGAAGAAGATGATGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 60
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 193 GTTTCAATTTTTCTT---GAAGATGACGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 249
Query 61 AAACAAACAACAAGTAAAAGGACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTGCTG 120
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 250 AAACAAACAACAAGTAAAAGTACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTTTTG 309
Query 121 CTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAAtctctacactctctgttcg 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 310 TTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAATCTCCACACTCTCTGTTCG 369
Query 181 ttctgattctctgagaccgtctcttcgtgttcctgctctctctgTTTTATCATCATCCAT 240
||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 370 TTCCGATTCTCTGAGACCGTCTCTTCGTGTTCCTACTCTCTCCGTTTTATCATCATCCAT 429
Query 241 GGATTCGTTTCACGGTGGTAGATTCCTTGCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 300
||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 430 GGATTCGTTTCACCGTGGTAGATTCCCTCCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 489
Query 301 CGACCATTTATTGCTGATTCTTTCGCACGGAATTAGGAGAGGTGaaaaaaaCCTAGTTTG 360
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 490 TGACCATTTATTGCTGATTCTTTCGCACGGAATTGGGAAAGGTGAAAAAAACCTAGTTTG 549
Query 361 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 609
Query 421 CGATGAGTTTAGATCGATTGTTCGATGCCCTAATGCTCCTTTGAACTATTCTTCATCTGT 480
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 610 CGATGAGTTTAGGTCGATTGTTCGATGTCCTAATGCTCCTTTGAACTATTCTTCATCTGT 669
Query 481 TGAGTTGCAATTTCGTGGAGATTTGGTGAAGAAGATGAAGAAGGAGAAGCAGAGCCGCCG 540
||| |||||||| |||||||||||||||||||||| || ||| || || |||| ||||
Sbjct 670 TGATTTGCAATTCCGTGGAGATTTGGTGAAGAAGAAGATGAA-GA-AA-CAGA---GCCG 723
Query 541 TCGTGTTCATAATTGGGAAAAAGTTGGTTACGAGGCGGTGATTGACGGCGACACGGTGGT 600
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 724 TCGTGTTCATAATTGGGAAAAGGTTGGTTATGAGGCGGTGATTGACGGCGACACGGTGGT 783
Query 601 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 843
Query 661 ATGTCAATTTGAGATTGGGGATTTGGAGGAGAAAGAGGTGACTCAAGCTGTTGCTGCAGC 720
|||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 844 GTGTCAATTTGAGATTGAGAATTCGGAGGAGAAAGAGGTGACTCAAGCTATTGCTGCTGC 903
Query 721 GCAAGAAGTTGTGAGGTGTGTTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 780
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 904 GCAAGAAGTTGTGAGGTGTGGTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 963
Query 781 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACGCCTGCTCTGCCTTCCGT 840
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 964 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACCCCTGCTCTGCCTTCGGT 1023
Query 841 TGCGAGAATCTACGGTTCTGATTCGATT---CAG-A--AGAAGAAGAGTGGGGTTAAGCA 894
|||||||||||||||||||||||||||| || | ||||||||||||| ||||||||
Sbjct 1024 TGCGAGAATCTACGGTTCTGATTCGATTGAGAAGAAGGAGAAGAAGAGTGGAGTTAAGCA 1083
Query 895 TGAGCTTTGTGTTTGTACAATGCTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 954
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1084 TGAGCTTTGTGTTTGTACAATGTTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 1143
Query 955 GTATCATTCGTGGCTTGGTGTTGAACGTTGGTTTATATATGATAACAATAGCGATGATGC 1014
|||||| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1144 GTATCACTCGTGGCTCGGTGTCGAACGTTGGTTTATATATGATAACAACAGCGATGATGG 1203
Query 1015 TATACAAGAGGAGATTGAGTTGCTTAGTTTGGAGAATTACAATGTGAGTCGACATGTTTG 1074
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1204 TATACAAGAGGAGATTGAGTTGCTTAGTTCGGAGAATTACAATGTGAGTCGACATGTTTG 1263
Query 1075 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCAAAAGAAGA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1264 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCGAAAGAAGA 1323
Query 1135 ATGTAATTGGGTTGGATTCTTTGATGTTGACGAGTTCTACTACTTCCCTACGCATCGCTC 1194
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1324 ATGCAATTGGGTTGGATTCTTCGATGTCGACGAGTTCTACTACTTCCCTACGCATCGCTC 1383
Query 1195 TCAAGGCTTACCGAGCAAAGACGCTTTGAAATCGCTTGTATCGAACTACACTTCTTGGGA 1254
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1384 TCAAGGCTTACCGAGCAAAAACGCTTTGAAGTCGCTTGTATCGAACTACACTTCTTGGGA 1443
Query 1255 TTTGGTTGGAGAGATCCGAACGGATTGTCATAGTTATGGTCCGTCCGGTCTAACCTCGGT 1314
|||||||||||||||| ||||||| |||||||| || ||||| |||||||| ||||||||
Sbjct 1444 TTTGGTTGGAGAGATCAGAACGGACTGTCATAGCTACGGTCCATCCGGTCTGACCTCGGT 1503
Query 1315 TCCATCTCAAGGCGTGACGGTTGGGTACACTTGTAGACAAGCGAACCCTGAGAGACATAA 1374
|||||| ||||||||||| || || ||||||||||||||||||||||| |||||||| ||
Sbjct 1504 TCCATCACAAGGCGTGACCGTAGGTTACACTTGTAGACAAGCGAACCCCGAGAGACACAA 1563
Query 1375 GTCGATAGTCCGACCTGAATTGCTCACAAGCTCATTGCTCAACGAAGTTCATCATTTTCA 1434
||||||| |||| ||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1564 GTCGATAATCCGCCCTGAGTTGCTCACAAGCTCATTGCTCAATGAAGTACATCATTTTCA 1623
Query 1435 GTTGAAAGAAGGAGTCGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1494
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GTTGAAAGAAGGAGTGGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1683
Query 1495 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1743
Query 1555 TGTGGACTGGCAAGAGAATCAAAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1614
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TGTTGACTGGCAAGAGAATCAGAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1803
Query 1615 AGAGGCAATCGAGCCGCCGGATTGGAAACGTCGGTTCTGTGAAGTGTGGGATACTGGATT 1674
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1804 AGAGGCAATCGAGCCGCCGGATTGGAAACGACGGTTCTGTGAAGTGTGGGACACTGGATT 1863
Query 1675 GAAGGATTTGGTTTTGTCGAATTTTGCTGATCAAGTGACTGGTTATTTGCCGTGGCAGAG 1734
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1864 GAAGGATTTGGTTATGTCGAATTTTGCTGATCAAGTGACTGGTTATCTGCCGTGGCAGAG 1923
Query 1735 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1770
||||||||||||||||||||||||||||||||||||
Sbjct 1924 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87549750480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5