BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921505
Length=1852
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27190.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3099 0.0
AT1G69990.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1116 0.0
AT3G46385.1 | Symbols: | pseudogene of unknown protein | chr3:... 176 7e-43
> AT1G27190.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:9446657-9448825 REVERSE LENGTH=2169
Length=2169
Score = 3099 bits (1678), Expect = 0.0
Identities = 1797/1855 (97%), Gaps = 5/1855 (0%)
Strand=Plus/Plus
Query 1 AACCAGATCCATCCATT-ATCATGAAGAAGATATTCATCACACTCTTATGGCTTCTCTTT 59
||| |||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 78 AACTAGATCCATCC-TTAATCATGAAGAAGATCTTCATCACACTCTTATGGCTTCTCTTC 136
Query 60 ATAAGTTCCTTTCTCTGTTCTTCTTCTTCAGCTGAAGACGACGTTCTTTGTCTCCAAGGT 119
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 137 ATAAGCTCGTTTCTCTGTTCTTCTTCTTCAGCTGAAGACGACGTTCTCTGTCTCCAAGGT 196
Query 120 TTGAAAAACTCACTCATCGATCCTTCTTCTAGACTCAGTTCCTGGTCTTTCCCAAACTCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TTGAAAAACTCACTCATCGATCCTTCTTCTAGACTCAGTTCCTGGTCTTTCCCAAACTCT 256
Query 180 TCAGCTTCTTCGATTTGTAAGCTCACTGGTGTTTCCTGCTGGAACGAGAAAGAGAATCGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 TCAGCTTCTTCGATTTGTAAGCTCACTGGTGTTTCCTGCTGGAACGAGAAAGAGAATCGG 316
Query 240 ATTATTTCTCTTCAGCTTCAATCGATGCAGCTCGCCGGTGAGATTCCTGAGTCTCTTAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 ATTATTTCTCTTCAGCTTCAATCGATGCAGCTCGCCGGTGAGATTCCTGAGTCTCTTAAG 376
Query 300 CTTTGTCGTAGTTTACAATCTCTGGATCTCTCTGGAAACGATCTCTCTGGTTCGATTCCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CTTTGTCGTAGTTTACAATCTCTGGATCTCTCTGGAAACGATCTCTCTGGTTCGATTCCT 436
Query 360 TCTCAAATCTGTTCTTGGCTTCCTTATCTAGTTACGTTAGATCTATCTGGGAATAAGCTT 419
|||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 437 TCTCAAATCTGTTCGTGGCTTCCTTATCTCGTTACGTTAGATCTGTCTGGGAATAAGCTT 496
Query 420 GGTGGTTCGATTCCTACTCAGATCGTTGAGTGTAAGTTCTTAAACGCTTTGATTTTGAGT 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 497 GGTGGTTCGATTCCGACTCAGATCGTTGAGTGTAAGTTCTTAAACGCTTTGATTCTGAGT 556
Query 480 GATAATAAGCTTTCTGGTTCGATTCCTTCTCAGTTGAGTCGATTAGATCGGCTTCGACGT 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 557 GATAATAAGCTTTCTGGTTCGATTCCTTCTCAGTTGAGTCGATTAGATCGCCTTCGACGT 616
Query 540 CTTTCTCTTGCTGGTAATGATCTCTCCGGTACGATTCCGTCTGAGCTGGCGCGGTTCGGA 599
|||||||| || || |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 617 CTTTCTCTAGCAGGGAATGATCTCTCCGGTACGATTCCGTCCGAGCTGGCTCGGTTCGGA 676
Query 600 GGAGACGATTTTAGCGGGAATGACGGACTTTGCGGGAAGCCGTTATCGAGATGTGGAGCG 659
||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||||||
Sbjct 677 GGAGACGATTTTAGCGGGAATAACGGACTTTGTGGGAAGCCTTTATCGCGATGTGGAGCG 736
Query 660 TTGAATGGGAGAAATCTGAGTATTATTATAGTTGCTGGAGTTATTGGAGCTGTTGGATCT 719
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 737 TTGAATGGGAGAAATCTGAGTATTATTATAGTTGCTGGAGTTCTTGGAGCTGTTGGATCT 796
Query 720 TTGTGTGTTGGTTTAGTGATATTTTGGTGGTTCTTTATTAGAGAAGGTAGTAGGAAGAAG 779
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 797 TTGTGCGTTGGTTTAGTTATATTCTGGTGGTTCTTTATTAGAGAAGGTAGTAGGAAGAAG 856
Query 780 AAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGATTGGTTTGTTGAGGTCA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 AAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGATTGGTTTGTTGAGGTCA 916
Query 840 CATAAGCTTGTTCAGGTGACTTTGTTTCAGAAACCTATTGTGAAGATTAAATTGGGTGAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 CATAAGCTTGTTCAGGTGACTTTGTTTCAGAAACCTATTGTGAAGATTAAATTGGGTGAT 976
Query 900 TTAATGGCTGCTACGAATAATTTTAGTTCAGGGAATATCGATGTTTCGTCGAGGACTGGG 959
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 TTAATGGCTGCTACGAACAATTTTAGTTCAGGGAATATCGATGTTTCGTCGAGGACTGGG 1036
Query 960 GTTTCGTATAAAGCGGATTTACCTGATGGCTCTGCGCTTGCGGTGAAGAGGCTTAGCGCT 1019
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1037 GTTTCGTATAAAGCGGATTTACCTGATGGGTCTGCACTTGCGGTGAAGAGGCTTAGTGCT 1096
Query 1020 TGTGGGTTTGGTGAGAAACAGTTCAGGTCGGAGATGAATAGGTTAGGAGAGCTTAGACAT 1079
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1097 TGTGGGTTTGGTGAGAAACAGTTTAGGTCGGAGATGAATAAGTTAGGAGAGCTTAGACAT 1156
Query 1080 CCGAATTTGGTGCCGCTTTTAGGTTATTGTGTTGTGGAAGATGAGAGACTGTTGGTGTAT 1139
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1157 CCGAATTTGGTGCCGCTTTTAGGGTATTGTGTTGTGGAAGATGAGAGACTGTTGGTGTAT 1216
Query 1140 AAGCATATGCCTAATGGCACGTTGTTTTCTCAGTTGCACAATGGTGGATTGTGTGATGCT 1199
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AAGCATATGGTTAATGGTACGTTGTTTTCTCAGTTGCACAATGGTGGATTGTGTGATGCT 1276
Query 1200 GTTTTGGATTGGCCTACTCGGCTTGCGATTGGTGTGGGAGCTGCTAAAGGGTTAGCTTGG 1259
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1277 GTTTTGGATTGGCCGACTCGGCGTGCGATTGGTGTGGGAGCTGCTAAAGGGTTAGCTTGG 1336
Query 1260 CTGCATCATGGATGTCAACCACCGTATTTGCATCAGTTCATTAGCTCCAATGTTATACTT 1319
||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1337 TTGCATCATGGATGCCAACCGCCGTATTTGCATCAGTTTATTAGCTCCAATGTTATACTT 1396
Query 1320 CTTGATGATGATTTTGATGCTCGGATAACCGATTACGGTTTGGCAAGGCTAGTTGGATCT 1379
||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 1397 CTTGATGATGATTTTGATGCTCGGATAACAGATTACGGATTGGCAAAGCTAGTTGGATCT 1456
Query 1380 CGTGATTCGAACGATAGCTCGTTCAATAATGGGGATTTGGGGGAGTTAGGTTATGTGGCG 1439
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1457 CGTGATTCGAACGATAGCTCGTTCAATAATGGGGATTTGGGGGAGTTAGGTTATGTAGCG 1516
Query 1440 CCTGAGTATTCGAGCACCATGGTTGCATCTTTGAAAGGAGATGTGTATGGGTTTGGGATT 1499
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1517 CCTGAGTATTCGAGCACCATGGTTGCGTCTTTGAAAGGAGATGTGTATGGGTTTGGGATT 1576
Query 1500 GTGCTTCTTGAATTGGTTACAGGGCAAAAGCCTTTGTCTGTTATTAACGGTGTGGAAGGG 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 GTGCTTCTTGAATTGGTTACAGGGCAAAAGCCTTTGTCTGTTATTAACGGTGTGGAAGGG 1636
Query 1560 TTTAAAGGGAGTTTAGTTGACTGGGTGAGTCAGTATTTGGGGACTGGTAGAAGTAAAGAC 1619
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1637 TTTAAAGGGAGTTTAGTTGACTGGGTGAGTCAGTATTTGGGTACTGGTAGAAGCAAAGAC 1696
Query 1620 GCTATTGATAGAAGCATATGTGATAAAGGACACGATGAGGAGATATTGCAGTTCTTGAAA 1679
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1697 GCTATTGATAGAAGCATATGTGATAAAGGACACGATGAGGAGATATTGCAGTTCCTGAAA 1756
Query 1680 ATCGCATGTAGCTGTGTTGTGTCCAGGCCTAAAGAAAGGCCAACGATGATTCAGGTGTAT 1739
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1757 ATCGCATGTAGCTGTGTTGTGTCCAGGCCTAAGGAAAGGCCAACGATGATTCAGGTGTAT 1816
Query 1740 GAATCTTTGAAGAGCATGGCAGATAAACACGGTGTTTCTGAGCATTACGATGAATTTCCA 1799
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1817 GAATCTTTGAAGAACATGGCAGATAAACACGGTGTTTCGGAGCATTACGATGAATTTCCT 1876
Query 1800 CTGGTCTTCAACAAACAAGAA-CTTTGAGTATCTT-ACCAGAAAGTAGTCTTTTT 1852
||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||
Sbjct 1877 CTGGTCTTCAACAAACAAGAAGCTT-GAGTATCTTTACCAGAAAGTAGTCTTTTT 1930
> AT1G69990.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:26360235-26362010 REVERSE LENGTH=1776
Length=1776
Score = 1116 bits (604), Expect = 0.0
Identities = 1406/1782 (79%), Gaps = 100/1782 (6%)
Strand=Plus/Plus
Query 81 TCTTCTTCA-GCTGAAGACGACGTTCTTTGTCTCCAAGG-TTTGAAAAAC-TCACTCATC 137
||||| ||| || |||||||| || || |||||| |||| ||| ||| | |||||||
Sbjct 43 TCTTC-TCACGCAGAAGACGATGTACTCTGTCTCAAAGGCTTT--AAATCATCACTCAAA 99
Query 138 GATCCTTC--TTCTAGACTCAGTTCCTGGTCTTTCCCAAACTCTTCAGCTTCTTCGATTT 195
|||||||| || | ||||| | ||||||||||| || |||| | || |||||||
Sbjct 100 GATCCTTCAAATC-A-ACTCAACACATGGTCTTTCCCTAA---TTCATCATCGTCGATTT 154
Query 196 GTAAGCTCACTGGTGTTTCCTGCTGGAACGAGAAAGAGAATCGGATTATTTCTCTTCAGC 255
| || ||||| || ||||| |||||||||| ||||||||||| ||| | ||||||||||
Sbjct 155 GCAAACTCACCGGAGTTTCTTGCTGGAACGCTAAAGAGAATCGAATTCTCTCTCTTCAGC 214
Query 256 TTCAATCGATGCAGCTCGCCGGTGAGATTCCTGAGTCTCTTAAGCTTTGTCGTAGTTTAC 315
||||||| ||||| ||| | ||| | || ||||| |||||||| || ||||| |||||||
Sbjct 215 TTCAATCAATGCAACTCTCTGGTCAAATCCCTGAATCTCTTAAACTATGTCGGAGTTTAC 274
Query 316 AATCTCTGGATCTCT-CTGGAAACGATCTCTCTGGTTCGATTCCTTCTCAAATCTGTTCT 374
||||| | ||||| | || || ||| |||| |||| ||||||||| ||||| ||||||
Sbjct 275 AATCTTTAGATCTTTCCT-TTAATGATTTCTCCGGTTTGATTCCTTCACAAATATGTTCT 333
Query 375 TGGCTTCCTTATCTAGTTACGTTAGATCTATCTGGGAATAAGCT-TGGTGGTTCGATTCC 433
|||||||||||||| ||||| |||||||| || || || || || | |||||||| ||
Sbjct 334 TGGCTTCCTTATCTTGTTACTTTAGATCTTTCCGGTAACAAACTCT-CCGGTTCGATACC 392
Query 434 -TACTCAGATCGTTGAGTGTAAGTTCTTAAAC-GCTTTGATTTTGAGTGATAATAAGCTT 491
| ||||||||||||| ||||| ||||||||| |||| | | | | | || ||| ||
Sbjct 393 GT-CTCAGATCGTTGACTGTAAATTCTTAAACAGCTTAG-CTCTAAACCAGAACAAG-TT 449
Query 492 -TCTGGTTCGATTCCTTCTCAGTTGAGTCGATTAGATCGGCTTCGACGTCTTTCTCTTGC 550
| ||||||||||| ||| | || | || ||| | || || | ||| |||||||| ||
Sbjct 450 AACCGGTTCGATTCCGTCTGAATTAACCCGGTTAAACCGTCTCCAACGACTTTCTCTAGC 509
Query 551 TGGTAATGATCTCTCCGGTACGATTCCGTCTGAGCTGGCGCGGTT-CGGAGGAGACGATT 609
|| ||| |||||||| ||| ||||||| || ||||| | | || ||||| ||| | ||
Sbjct 510 TGATAACGATCTCTCTGGTTCGATTCCCTCCGAGCTATCTC-ATTACGGAGAAGATGGTT 568
Query 610 TTAGCGGGAATGACGGACTTTGCGGGAAGCCGTTATCGAGA-TGTGGAGCGTTGAATGGG 668
|| |||| |||| ||||||||| || ||||||||||| | | || || |||| || ||
Sbjct 569 TTCGCGGTAATGGCGGACTTTGTGGTAAGCCGTTATCCA-ACTGCGGTTCGTTTAACGGT 627
Query 669 AGAAATC-TGA-GTATTATTATAGTTGCTGGAGTTATTGGAGCTGTTGGATCTTTGTGTG 726
| ||| | | | | || ||| || |||||| ||||||||||||||||| || |||||||
Sbjct 628 A-AAAACTTAACG-ATCATTGTAACTGCTGGCGTTATTGGAGCTGTTGGTTCATTGTGTG 685
Query 727 TTGG-TTTAGTGATATTTTGGTGGTTCTTTATTAGAGA-AGGTAGTAGGAAGAAGAA--A 782
|||| ||| | ||| ||||||||||||||||||||||| ||| || | || ||| || |
Sbjct 686 TTGGATTT-GGGATGTTTTGGTGGTTCTTTATTAGAGATAGG-AGGAAGATGAATAACTA 743
Query 783 -GGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGATTGGATTGGTTTGTTGAGGTCACA 841
|||||||| || || || | ||||||||||||||||||||||||||||||||| |||||
Sbjct 744 CGGTTATGGCGCCGGAAAATGTAAGGATGATAGTGATTGGATTGGTTTGTTGAGATCACA 803
Query 842 TAAGCTTGTTCAGGTGACTTTGTTTCAGAAACCTATTGTGAAGATTAAATTGGGTGATTT 901
||||||||| || || ||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 804 TAAGCTTGTGCAAGTTACTCTGTTTCAGAAACCTATTGTGAAGATCAAATTGGTTGATTT 863
Query 902 AATGGCTGCTACGAATAATTTT-AGTTCAGGGAATATCGATGTTTCGTCGAGGACTGGGG 960
|| | |||||||| |||| | ||| |||||||||| |||||||||||| | ||| |
Sbjct 864 GATTGAAGCTACGAACGGTTTTGA-TTCCGGGAATATCGTTGTTTCGTCGAGAAGTGGTG 922
Query 961 TTTCGTATAAAGCGGATTTACCTGATGGCTCTGCGCTTGC-GGTGAAGAGGCTTAGC-GC 1018
| ||||| ||||| ||||| |||||||| ||| | ||| ||| ||||||||||| |
Sbjct 923 TCTCGTACAAAGCTGATTTGCCTGATGGGTCTACA-TTGGAGGTTAAGAGGCTTAGTAG- 980
Query 1019 TTGT-G-G-GTTTGGTGAGAAACAGTTCAGGTCGGAGATGAATAGGTTAGGAGAGCTTAG 1075
|||| | | | || ||||||||||||| ||||| ||||| || | |||||| || | ||
Sbjct 981 TTGTTGTGAGCTTAGTGAGAAACAGTTTAGGTCTGAGATTAACAAGTTAGGTCAGATCAG 1040
Query 1076 ACATCCGAATTTGGTGCCGCTTTTAGG-TTATTGTGTTGTGGAAGATGAGAGACTGTTGG 1134
|||||||||||||| |||||| | || || ||| ||||||||||| |||| | ||||||
Sbjct 1041 GCATCCGAATTTGGTTCCGCTTCTCGGGTT-TTGCGTTGTGGAAGACGAGATATTGTTGG 1099
Query 1135 TGTATAAGCATATGCCTAATGGCACGTTGTTTTCTCAGTTGCA-CAATGGTGGATTGTGT 1193
|||||||||||||| ||||||| ||||||| ||||||| |||| |||||| | ||
Sbjct 1100 TGTATAAGCATATGGCTAATGGGACGTTGTATTCTCAGCTGCAGCAATGG-G-AT----- 1152
Query 1194 GATGCTGTTTTGGATTGGCCTACTCGGCTTGCGATTGG-TGTGGGAGCTGCTAAAGGGTT 1252
|| || ||||||| |||||| || || | | ||| ||||| |||| |||| |
Sbjct 1153 -AT--TG------ATTGGCCAACTCGGGTTA-GAGTCGCTGTTGGAGCGGCTAGAGGGCT 1202
Query 1253 AGCTTGGCTGCATCATGGATGTCAACCACCGTATTTGCATCAGT-TCATTAGCTCCAATG 1311
||||||| |||| |||||||||||||| |||| ||||||| | | || ||||| ||||
Sbjct 1203 AGCTTGGTTGCACCATGGATGTCAACCGTTGTATATGCATCAATAT-ATCAGCTCAAATG 1261
Query 1312 TTATACTTCTTGATGATGATTTTGATGCTCG-GATAACCGATTACGGTTTGGC-AAGGCT 1369
| || |||||||| || ||||| |||||||| | || ||||||||||||| ||| |
Sbjct 1262 TGATTCTTCTTGACGAAGATTTCGATGCTCGTGTTATT-GATTACGGTTTGGGGAAGT-T 1319
Query 1370 AGTTG-GATCTCGTGATTCGAACGATAGCTCGTTCAATAATGGGGATTTGGGGGAGTTAG 1428
||| | | |||| || || || ||||||||||| | ||| || | |||| |
Sbjct 1320 AGT-GAGTTCTCAAGACTCTAAAGATAGCTCGTTTAGTAACGGC-A--------AGTTTG 1369
Query 1429 GTTATGTGGCGCCTGAGTATTCGAGCACCATGGTTGCATCTTTGAAAGGAGATGTGTATG 1488
|||| || |||||||||||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 1370 GTTACGTTGCGCCTGAGTATTCGAGCACTATGGTTGCGTCTTTGAGTGGAGATGTGTATG 1429
Query 1489 GGTTTGGGATTGTGCTTCTTGA-ATTGGTTACAGGGCAAAAGCCT-TTGTCTG-TTATTA 1545
|||||||||||||||||||||| |||| ||||||| ||||||||| || | || ||| |
Sbjct 1430 GGTTTGGGATTGTGCTTCTTGAGATTG-TTACAGGACAAAAGCCTGTT-T-TGATTAACA 1486
Query 1546 ACGGTGTGGAAGGGTTTAAAGG-GAGTTTAGTTGACTGGGTGAGTCAGTATTTGGGGACT 1604
|||||| ||||||||||| || ||||||||| || ||||||||| || ||||| | | |
Sbjct 1487 ACGGTGAAGAAGGGTTTAA-GGAGAGTTTAGTGGAGTGGGTGAGTAAGCATTTGAGTAAT 1545
Query 1605 GGTAGAAGTAAAGACGCTATTGATAGAAGCATATGTGATAAAGGACACGATGAGGAGATA 1664
|||||||| ||||| |||||||||||||| || | || ||||||| | ||||| ||||||
Sbjct 1546 GGTAGAAGCAAAGATGCTATTGATAGAAGGATTTTTGGTAAAGGATATGATGATGAGATA 1605
Query 1665 TTGCA-GTTCTTGAAAATCGCATGTAGCTGTGTTGTGTCCAGGCCTAAAGAAAGGCCAAC 1723
|||| ||| |||| ||| || ||||| || ||||| || |||||||||||||| ||
Sbjct 1606 ATGCAAGTT-TTGAGAATTGCGTGTAGTTGCGTTGTATCGAGGCCTAAAGAAAGACCGTT 1664
Query 1724 GATGATTCAGGTGTATGAATCTTTGAAGAGCATGGCAGATAAACACGGTGT-TTCT--GA 1780
|||||| || || |||||||||||||||| ||| |||| |||| ||| | |||| ||
Sbjct 1665 GATGATCCAAGTTTATGAATCTTTGAAGAATTTGGGAGATCAACATGGTTTCTTCTCTGA 1724
Query 1781 GCATTA-CGATGAATTTCCACTGGTCTTCAACAAACAAGAAC 1821
| || | |||||| |||||||| |||| |||||||||||||
Sbjct 1725 GTAT-AGCGATGAGTTTCCACTCATCTTTAACAAACAAGAAC 1765
> AT3G46385.1 | Symbols: | pseudogene of unknown protein | chr3:17065485-17066571
REVERSE LENGTH=1087
Length=1087
Score = 176 bits (95), Expect = 7e-43
Identities = 110/117 (94%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 701 TATTGGAGCTGTTGGATCTTTGTGTGTTGGTTTAGTGATATTTTGGTGGTTCTTTATTAG 760
||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||
Sbjct 909 TATTGGAGCTGTTGGATCTTTGTATGTTGGTTTAGTAATATTTTGGTAGTTCTTTATTAG 968
Query 761 AGAAGGTAGTAGGAAGAAGAAAGGTTATGGTGCTGGGAAGTCTAAGGATGATAGTGA 817
|||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct 969 AGAAGGTAGTAGGAAGAAGAAAAGTTATGGTGCTGAAAA-TCTAAGGATGATAGTGA 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91666195170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5