BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921517
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 348 8e-95
> AT1G27110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9412820-9417504 REVERSE LENGTH=1762
Length=1762
Score = 348 bits (188), Expect = 8e-95
Identities = 294/341 (86%), Gaps = 23/341 (7%)
Strand=Plus/Plus
Query 34 AAGGAAGCAAATTTGTTTA-CTGGGGTTATGAGGTCAACACCTCTTCATATGATTGCATT 92
||| ||||| ||||| ||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 153 AAGAAAGCAGATTTG-TTAGCTGTGGTTATGAGGTCAACACCTCTTCAGATGATTGCATT 211
Query 93 GCTTCCATTAACTCTTATTCT---CA----C-----CA--G-AGAGAG--GAAGGTGATT 135
||||||||||||||||||||| || | | | |||||| ||||||||||
Sbjct 212 GCTTCCATTAACTCTTATTCTGACCAGGTTCTTGGTTATGGAAGAGAGAAGAAGGTGATT 271
Query 136 CTAGAAGCGCCATTGTATGATAAAGATTGTGTTTTGGGCAACATTTTGGCTGCTCATTAC 195
|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 272 CTAGAAGCGCCAAACTATGATAATGATTGTGTTTTGGCCAACATTTTGGCTGCTCATTAC 331
Query 196 CTTAGCTCTTTTGACTTTGCTAGAGCCA-ATTCCTATGCTCGAGCTGCAGAATCACATCT 254
||||||||||||||| || |||||||| || | ||||||| |||||||||||| | |||
Sbjct 332 CTTAGCTCTTTTGACCCTGTTAGAGCCAGAT-CATATGCTCTAGCTGCAGAATCCCGTCT 390
Query 255 TGGGAAAGCCACGCCGTATGAGAAAGCAGTTTTCGAGGCTGTTAATTACTTAATCTCTGA 314
|||||||||||| | ||||||||| ||||||||||||||||||| ||||||| |||||||
Sbjct 391 TGGGAAAGCCACACTGTATGAGAAGGCAGTTTTCGAGGCTGTTAGTTACTTACTCTCTGA 450
Query 315 AAATATGGAC-ACCGATGTGGCTTTGGATTTACACTCTAAG 354
||||||||| || |||||||||||||| ||||||||||||
Sbjct 451 GAATATGGACGAC-GATGTGGCTTTGGAGTTACACTCTAAG 490
Score = 303 bits (164), Expect = 2e-81
Identities = 204/223 (91%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 421 TGTCATGTTCTTCAAACTGAATTTCGTTTTAAAGAAGCAGTAGAGTTCATGGAAGGATGC 480
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |
Sbjct 740 TGTCATGTTCTTCAAACTGAATGTCGTTTTAAAGAAGCAGTAAAGTTCATGGAAGAACAC 799
Query 481 TCAGCTTCATGGGATTCCTGCTCTTCCTTAAGGTATTCGCATAATTGGTGGCATGTAGCT 540
|||| |||||||||||| ||||| |||||||||| |||||||||||||||||| ||||||
Sbjct 800 TCAGATTCATGGGATTCTTGCTCATCCTTAAGGTTTTCGCATAATTGGTGGCACGTAGCT 859
Query 541 GTTTGTTACTTGGAAGGAGGGTCTCCCATAAGTAAGGTACAAGATA-TATATGATCATCA 599
||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||
Sbjct 860 GTTTGTTACTTGGAAGGAGGGTCTCACATAAGTAAGGTAGAAGA-AGTATATGATCATCA 918
Query 600 GATGTGTAAA-AGGCTGGAGAAAGATGATGTTGTTGCTAGAGA 641
|||||| ||| || ||||||||||| |||| ||||||||||||
Sbjct 919 GATGTGGAAAGAG-CTGGAGAAAGACGATGCTGTTGCTAGAGA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55572003315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5