BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921521 Length=1647 Score E Sequences producing significant alignments: (Bits) Value AT1G27070.1 | Symbols: | 5'-AMP-activated protein kinase-relat... 2571 0.0 > AT1G27070.1 | Symbols: | 5'-AMP-activated protein kinase-related | chr1:9396658-9399453 REVERSE LENGTH=2114 Length=2114 Score = 2571 bits (1392), Expect = 0.0 Identities = 1568/1652 (95%), Gaps = 16/1652 (1%) Strand=Plus/Plus Query 1 TGTTCGACGAAATGCTTCAACCATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGT 60 |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 207 TGTTCGTCGAAATGCTCCAACCATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGT 266 Query 61 TTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCCTCTTTCTTCTTCTTTTGGTTC 120 |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| Sbjct 267 TTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCATC--T-TTCTTCTTTTGGTTC 323 Query 121 AACTTTTAATCCCAATTATAAAGCCAAAGCTTGTATACGTTTTGCAAGAAAAGGTTGTGG 180 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| Sbjct 324 AACTTTTAATCCCAATTATAAGGCCAAAGCTTGCATACGTTTTGCAAGAAAAGTTTGTGG 383 Query 181 GTCTACTGTTCTAGGGTTTCTTGAGGTCAAGCCGAGGAAGAAAAGTTGTTGCTCTCGGTG 240 ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 384 GTCTACTGTTCTAGGGTTTCTTGAGGTGAAGCCGAGGAAGAAAAGTTGTTGTTCTCGTTG 443 Query 241 TAATGGGGTTTTGAGGATGTGTAATAAGCGTAGTTTGGGTTGGGATAGCGAGGGAAGTAA 300 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 444 TAATGGGGTTTCGAGGATGTGTAATAAGCGTAATTTGGGTTGGGATAGCGAGGGAAGTAA 503 Query 301 GGATCTTGAATCGGAGATTTTGGAGTTTATGAAGAATTCGGAGAAGCCTGGGATGTTTCC 360 |||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 504 GGATCTTGAAACCGAGATTTTGGAGTTTATGAAGAATTCGGAGAAACCTGGGATGTTTCC 563 Query 361 GAGCAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCA 420 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 564 GAGTAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCA 623 Query 421 AGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGGAGGTCCAAGTAAA 480 |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 624 AGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGAAGGTCCGAGTAAA 683 Query 481 CGAGAACGTCATGCCACGGGAATTACATATCGAGAAACAGCTTCGTGACTGTAATTCTCA 540 |||||||| | ||||| ||| |||||||||||||||||||||| | | |||||||||| Sbjct 684 TGAGAACGTGACGCCACAGGATTTACATATCGAGAAACAGCTTCCTAATTGTAATTCTCC 743 Query 541 AGAAATGGATAAAACTTTGAGTCATGGAGATCTTGATTTTTCCTCAAATCTTTCATCTTC 600 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 744 AGAAATGGATAAAACTTTGAATCATGGAGATCTTGATCTTTCCTCAAATCTTTCATCTTC 803 Query 601 AACAGAAGC-GGTAG-ATGGTGAG-AATGAGAGTGGAATTGAAGGCATTTTGACTAGATT 657 |||||| | || | || | || || || ||||||||||||||||||||||| ||||| Sbjct 804 GACAGAA-CAAGTGGAAT-CT-AGAAACGATAGTGGAATTGAAGGCATTTTGACCAGATT 860 Query 658 GGAGAAAGAAAGGAATTTGGGTCTAGGGATTAGCTTGAGGGAGAATGGGAAAAGCAATGG 717 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 861 GGAGAAAGAAAGGAATTTGAGTCTAGGGATTAGCGTGAGGGAGAATGGGAAAAGCAATGG 920 Query 718 TGCCGTGAATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGC 777 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 921 TGCCATGCATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGC 980 Query 778 TAGTGAAATTCAAGAAGTCGACGGTAGTCGAGGCTCAGGTGAATATGCACAAACTAGGTA 837 |||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| Sbjct 981 TAGTGAAATTCAAGAAGTCGACGGCAGTAGAGGCTCAGGTGAATATGCACAAAGTAGGTA 1040 Query 838 TCAAGGAGCCAAGTCGGTTTCAGGAACGCCAGGCTTAAGCGATTCACCTACATCAGAAAC 897 |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 1041 TCAAGGAGCCAAGTCGGTTTCAGGAAAGCCAGGCTTAAGCGATTCACCTACGTCAGAAAC 1100 Query 898 ATGGAGGACGTGGAGTATGAGGAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGA 957 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1101 ATGGAGGACGTGGAGTATGAGAAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGA 1160 Query 958 AATTTCTTCCAGTGGTTTGACTGGTGTGAAGAAGGATGATGATACGAAGAAGGATTCTGG 1017 |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| Sbjct 1161 AATTTCCTCCAGTGGTTTGACTGGTGTGAAGAA--A-GATGATACGAAGAAGGATTCTGG 1217 Query 1018 TGATAGCATGAAT-GGAAGAGATAGAACTACATCTTCCCCAGAAGATGTAAACAAAACTC 1076 ||||||||||||| |||| |||||||| | |||||||| ||||||||||||| ||||||| Sbjct 1218 TGATAGCATGAATGGGAA-AGATAGAATTGCATCTTCCTCAGAAGATGTAAATAAAACTC 1276 Query 1077 ATATCAAA-AGCCGTCTTCAGCATCTCCAGTCAGAACTTTCTTCTGTTCTCCACTCCCTT 1135 |||||||| | ||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 1277 ATATCAAACA-CCGTCTTCAACAGCTCCAGTCAGAACTTTCTTCTGTTCTTCACTCCCTT 1335 Query 1136 AGATCTCCTCCTGATACAGTTGTGACAAGTAAGGATAGTGAGATAACTTCTGGGAACTTG 1195 |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1336 AGATCTCCTCCTGATAAAGTTGTGACAAGTAAGGATAGTGAGACAACTGCTGGGAACTTG 1395 Query 1196 GAGAACCTCTCTGATGATTGGGAGTTCAAAGAGAATGAGATCATACATGCCCAGAATAAG 1255 ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| Sbjct 1396 GAGAACCTCTCTGATGATTGGGAGTACAAAGAGAATGAGATCATACATGCCCAAAATAAG 1455 Query 1256 TTGCGGTCTACACGAGCAAAGTTGGCAGTTCTTGAAGGAAAAATGGCGATGGCTATAATA 1315 |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| Sbjct 1456 TTGCGGTCTACACGAGCAAAGTTGGCTGTTCTTGAAGGAAAAATGGCTATGGCTATAATA 1515 Query 1316 GATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAATAGAGCTTTA 1375 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1516 GATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAGTAGAGCTTTA 1575 Query 1376 CGATTACTTCGAACCGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACG 1435 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1576 CGATTACTTCGAACTGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACG 1635 Query 1436 GGTTCATTTGATGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCAGAGAACGGAGTCTTC 1495 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1636 GGTTCATTTGACGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCTGAGAACGGAGTCTTC 1695 Query 1496 TCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAG 1555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1696 TCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAG 1755 Query 1556 TGGAAAGTTGACCCGCTTCGACCCATTGTTACTTGCGGTGGATATGAGAACAATCTGCTA 1615 ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| Sbjct 1756 TGGAAAGTTGACCCGCTTCGACCCATTGTTACTAGTGGTGGATATGAAAACAATCTGCTA 1815 Query 1616 ATCATCTCTTGAGGTCAAAGGCAACGATATTT 1647 ||||||||||||||||||||||||| |||||| Sbjct 1816 ATCATCTCTTGAGGTCAAAGGCAACAATATTT 1847 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81375083445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5