BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921521
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27070.1 | Symbols: | 5'-AMP-activated protein kinase-relat... 2571 0.0
> AT1G27070.1 | Symbols: | 5'-AMP-activated protein kinase-related
| chr1:9396658-9399453 REVERSE LENGTH=2114
Length=2114
Score = 2571 bits (1392), Expect = 0.0
Identities = 1568/1652 (95%), Gaps = 16/1652 (1%)
Strand=Plus/Plus
Query 1 TGTTCGACGAAATGCTTCAACCATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGT 60
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 207 TGTTCGTCGAAATGCTCCAACCATGGTCTCTATCAACTCCGGCCCCATTTCATCTTTTGT 266
Query 61 TTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCCTCTTTCTTCTTCTTTTGGTTC 120
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 267 TTCTCGCTATTCGATGATTGATTCCGATACCCTTTTGCATC--T-TTCTTCTTTTGGTTC 323
Query 121 AACTTTTAATCCCAATTATAAAGCCAAAGCTTGTATACGTTTTGCAAGAAAAGGTTGTGG 180
||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||
Sbjct 324 AACTTTTAATCCCAATTATAAGGCCAAAGCTTGCATACGTTTTGCAAGAAAAGTTTGTGG 383
Query 181 GTCTACTGTTCTAGGGTTTCTTGAGGTCAAGCCGAGGAAGAAAAGTTGTTGCTCTCGGTG 240
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 384 GTCTACTGTTCTAGGGTTTCTTGAGGTGAAGCCGAGGAAGAAAAGTTGTTGTTCTCGTTG 443
Query 241 TAATGGGGTTTTGAGGATGTGTAATAAGCGTAGTTTGGGTTGGGATAGCGAGGGAAGTAA 300
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 444 TAATGGGGTTTCGAGGATGTGTAATAAGCGTAATTTGGGTTGGGATAGCGAGGGAAGTAA 503
Query 301 GGATCTTGAATCGGAGATTTTGGAGTTTATGAAGAATTCGGAGAAGCCTGGGATGTTTCC 360
|||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 504 GGATCTTGAAACCGAGATTTTGGAGTTTATGAAGAATTCGGAGAAACCTGGGATGTTTCC 563
Query 361 GAGCAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCA 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 GAGTAAGAAGGATTTGATTCGTTCTGGAAGATTTGATCTTGTGGAGAGAATTGTAAACCA 623
Query 421 AGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGGAGGTCCAAGTAAA 480
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 624 AGGTGGATGGCTTTCTATGGGATGGGATTTGGATGAACAAGAAGAGAAGGTCCGAGTAAA 683
Query 481 CGAGAACGTCATGCCACGGGAATTACATATCGAGAAACAGCTTCGTGACTGTAATTCTCA 540
|||||||| | ||||| ||| |||||||||||||||||||||| | | ||||||||||
Sbjct 684 TGAGAACGTGACGCCACAGGATTTACATATCGAGAAACAGCTTCCTAATTGTAATTCTCC 743
Query 541 AGAAATGGATAAAACTTTGAGTCATGGAGATCTTGATTTTTCCTCAAATCTTTCATCTTC 600
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 744 AGAAATGGATAAAACTTTGAATCATGGAGATCTTGATCTTTCCTCAAATCTTTCATCTTC 803
Query 601 AACAGAAGC-GGTAG-ATGGTGAG-AATGAGAGTGGAATTGAAGGCATTTTGACTAGATT 657
|||||| | || | || | || || || ||||||||||||||||||||||| |||||
Sbjct 804 GACAGAA-CAAGTGGAAT-CT-AGAAACGATAGTGGAATTGAAGGCATTTTGACCAGATT 860
Query 658 GGAGAAAGAAAGGAATTTGGGTCTAGGGATTAGCTTGAGGGAGAATGGGAAAAGCAATGG 717
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 861 GGAGAAAGAAAGGAATTTGAGTCTAGGGATTAGCGTGAGGGAGAATGGGAAAAGCAATGG 920
Query 718 TGCCGTGAATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGC 777
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 TGCCATGCATGATATCTCCCCAAATGGTTCAGTTCCTTGGTCTTCCAGGATTGTGACAGC 980
Query 778 TAGTGAAATTCAAGAAGTCGACGGTAGTCGAGGCTCAGGTGAATATGCACAAACTAGGTA 837
|||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 981 TAGTGAAATTCAAGAAGTCGACGGCAGTAGAGGCTCAGGTGAATATGCACAAAGTAGGTA 1040
Query 838 TCAAGGAGCCAAGTCGGTTTCAGGAACGCCAGGCTTAAGCGATTCACCTACATCAGAAAC 897
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1041 TCAAGGAGCCAAGTCGGTTTCAGGAAAGCCAGGCTTAAGCGATTCACCTACGTCAGAAAC 1100
Query 898 ATGGAGGACGTGGAGTATGAGGAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGA 957
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ATGGAGGACGTGGAGTATGAGAAGAGCTGGATTTACTGATGAAGATTTTGAAGCTGCTGA 1160
Query 958 AATTTCTTCCAGTGGTTTGACTGGTGTGAAGAAGGATGATGATACGAAGAAGGATTCTGG 1017
|||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1161 AATTTCCTCCAGTGGTTTGACTGGTGTGAAGAA--A-GATGATACGAAGAAGGATTCTGG 1217
Query 1018 TGATAGCATGAAT-GGAAGAGATAGAACTACATCTTCCCCAGAAGATGTAAACAAAACTC 1076
||||||||||||| |||| |||||||| | |||||||| ||||||||||||| |||||||
Sbjct 1218 TGATAGCATGAATGGGAA-AGATAGAATTGCATCTTCCTCAGAAGATGTAAATAAAACTC 1276
Query 1077 ATATCAAA-AGCCGTCTTCAGCATCTCCAGTCAGAACTTTCTTCTGTTCTCCACTCCCTT 1135
|||||||| | ||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1277 ATATCAAACA-CCGTCTTCAACAGCTCCAGTCAGAACTTTCTTCTGTTCTTCACTCCCTT 1335
Query 1136 AGATCTCCTCCTGATACAGTTGTGACAAGTAAGGATAGTGAGATAACTTCTGGGAACTTG 1195
|||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1336 AGATCTCCTCCTGATAAAGTTGTGACAAGTAAGGATAGTGAGACAACTGCTGGGAACTTG 1395
Query 1196 GAGAACCTCTCTGATGATTGGGAGTTCAAAGAGAATGAGATCATACATGCCCAGAATAAG 1255
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1396 GAGAACCTCTCTGATGATTGGGAGTACAAAGAGAATGAGATCATACATGCCCAAAATAAG 1455
Query 1256 TTGCGGTCTACACGAGCAAAGTTGGCAGTTCTTGAAGGAAAAATGGCGATGGCTATAATA 1315
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1456 TTGCGGTCTACACGAGCAAAGTTGGCTGTTCTTGAAGGAAAAATGGCTATGGCTATAATA 1515
Query 1316 GATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAATAGAGCTTTA 1375
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1516 GATGCACAGAGGATTGTACGGGAGAAACAGAGAAGAATAGATCATGCTAGTAGAGCTTTA 1575
Query 1376 CGATTACTTCGAACCGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACG 1435
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 CGATTACTTCGAACTGCATCCATAGTGTGGCCTAATTCAGCCTCAGAAGTTCTATTAACG 1635
Query 1436 GGTTCATTTGATGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCAGAGAACGGAGTCTTC 1495
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1636 GGTTCATTTGACGGTTGGTCTACCCAGAGGAAGATGAAGAAAGCTGAGAACGGAGTCTTC 1695
Query 1496 TCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 TCTTTGTCTCTAAAGCTATATCCTGGAAAATATGAGATAAAGTTTATAGTTGATGGCCAG 1755
Query 1556 TGGAAAGTTGACCCGCTTCGACCCATTGTTACTTGCGGTGGATATGAGAACAATCTGCTA 1615
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 1756 TGGAAAGTTGACCCGCTTCGACCCATTGTTACTAGTGGTGGATATGAAAACAATCTGCTA 1815
Query 1616 ATCATCTCTTGAGGTCAAAGGCAACGATATTT 1647
||||||||||||||||||||||||| ||||||
Sbjct 1816 ATCATCTCTTGAGGTCAAAGGCAACAATATTT 1847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5