BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921522
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27060.1 | Symbols: | Regulator of chromosome condensation ... 1738 0.0
> AT1G27060.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr1:9395023-9396673 FORWARD LENGTH=1161
Length=1161
Score = 1738 bits (941), Expect = 0.0
Identities = 1078/1146 (94%), Gaps = 2/1146 (0%)
Strand=Plus/Plus
Query 21 ATGGCCGAACACGGTGAGACTCAAGCTGATGAAGAAGAAGAACAGCAAGTATGGAGCTGG 80
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1 ATGGCCGAACACGGTGAGACTCAAGCTGATGAAGAAGAAGAAGAACAAGTATGGAGCTGG 60
Query 81 GGAGCTGGTACGGACGGACAGTTAGGTACGGCTAAGCTGCAAGACGAGCTTCTCCCGCAG 140
|| ||||||||||||||||||||||| ||| | |||||||||||||||||||| ||||||
Sbjct 61 GGTGCTGGTACGGACGGACAGTTAGGGACGACAAAGCTGCAAGACGAGCTTCTTCCGCAG 120
Query 141 CTTCTCTCTCTGACGTCACTTCCTTCCATATCTATGCTCGCCTGTGGCGGCGCTCACGTC 200
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 121 CTTCTCTCTCTGACATCACTTCCTTCCATATCAATGCTCGCTTGTGGCGGCGCTCACGTC 180
Query 201 ATCGCTTTGACTTCTGATGGGAAGGTCTTCACATGGGGAAGAGGAAGCTCTGGTCAGTTA 260
|||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGCTTTGACTTCTGGTGGTAAAGTCTTCACATGGGGAAGAGGAAGCTCTGGTCAGTTA 240
Query 261 GGACATGGAGACATCCTCAACATTACTTTGCCAAAGCTTGTATCTTTCTTTGACGGCTAT 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 241 GGACATGGAGACATCCTCAACATTACTTTGCCAAAGCTTGTATCTTTCTTTGACGACTCT 300
Query 321 GTTATTACTCAAGCCGCAGCTGGATGGAGTCATTCTGGTTTTGTTTCAGATTCTGGTTGT 380
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTATTACTCAAGCTGCTGCTGGATGGAGTCATTCTGGTTTTGTTTCAGATTCTGGTTGT 360
Query 381 CTTTTCACATGTGGTAATGGCTCATTTGGTCAGCTTGGTCATGGTGATAACATGTCATTA 440
||||||||||||| |||||||| ||||| ||||||||||||||||||| | ||||||||
Sbjct 361 ATTTTCACATGTGGCAATGGCTCGTTTGGGCAGCTTGGTCATGGTGATACCTTGTCATTA 420
Query 441 AGCACTCCAGCTAAAGTCTCTTACTTTAACAATGAGAGTGTGAAGATGGTAGCTTGCGGT 500
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||
Sbjct 421 AGCACTCCAGCTAAAGTCTCTCACTTTAACAATGACAGTGTGAAGATGGTAGCTTGTGGT 480
Query 501 ATGCGCCACTCACTTGTCTTGTTTGCAGGGAATCAAGTGTGCGGATTTGGATCTGGAAAA 560
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 ATGCGCCACTCACTTGTTTTGTTTGCAGGGAATCAAGTGTGTGGATTTGGATCTGGAAAA 540
Query 561 CGTGGACAGTTAGGTTTCACATCAGACGGAACAAAATCAGTAAATCTTCCATGTGTTGTC 620
|||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||||
Sbjct 541 CGTGGACAGTTAGGTTTCTCATCAGACAGAATAAAATCAGTAAATCTTCCTTGTGTTGTC 600
Query 621 TCTGGATTAAAAGATGTTGAGGTTACTCGTATACCAGCTAATGGAGATCATAGTGCAGCT 680
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 601 TCTGGATTAAAAGATGTTGAGGTTGTTCGTATATCAGCTAATGGAGATCATAGTGCAGCT 660
Query 681 ATATCTGCTGATGGACAGTTCTTCAGTTGGGGAAGAGGATTCTGTG-CTGGCCCTGATGT 739
||||| |||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct 661 ATATCCGCTGATGGACAGTTCTTCAGTTGGGGAAGAGGATTCTGCGGC-GGCCCTGATGT 719
Query 740 TCAAACCCCTCAGTGTTTGCCTTCATCTCTATCTTTCAGAGAAGTTGCTGTAGGATGGAA 799
||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 720 TCATGCCCCTCAGAGCTTGCCTTCACCTCTATCTTTCAGAGAAGTTGCTGTAGGATGGAA 779
Query 800 TCATGCTTTACTACTAACCGTCGATGGCGAGGTTTTCAAGCTTGGTAACACCCTTAATAA 859
||||||||||||||| ||||||||||| ||||| ||||||||||||| ||| ||||||||
Sbjct 780 TCATGCTTTACTACTGACCGTCGATGGTGAGGTGTTCAAGCTTGGTAGCACTCTTAATAA 839
Query 860 ACAACCTGAGAAGCAACAACTGCAAATAGATTCCTCTGAAGCTCTCTTGGCGAAAGTTTC 919
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 840 ACAACCTGAGAAGCAACAACTGCAAATAGATTCCTCTGAAGCTCTCTTTGAGAAAGTTCC 899
Query 920 AGATTTTGATGGAGTTAAAGTTCTGCAAATTGCAGCAGGAGCAGAGCATTCTGCTGCCGT 979
||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 900 GGATTTTGATGGAGTTAAAGTTATGCAGATAGCAGCAGGAGCAGAGCATTCTGCTGCCGT 959
Query 980 AACAGAGATTGGAGATGTTAAGACATGGGGATGGGGTGAACATGGTCAGCTAGGCCTTGG 1039
|||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 AACAGAGAATGGAGAAGTTAAGACATGGGGATGGGGAGAACATGGTCAGCTAGGCCTTGG 1019
Query 1040 AAATACCAATGATCAGACCAGTCCTCAACTGGTGAGCCTAGGAAGTATAGACCTGCGAAC 1099
|||||||||||| || ||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1020 AAATACCAATGACCAAACCAGTCCTGAATTGGTGAGCTTAGGAAGTATAGACCTGCGAAC 1079
Query 1100 GAAAGAGATCAAAGTATATTGCGGAAGTGGATTTACTTATGCAGTAAGGCGAAAGCAAGG 1159
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1080 GAAAGAGATCAAAGTATATTGCGGAAGTGGATTTACTTATGCAGTAAAACGAAAACAAGA 1139
Query 1160 GCTTTC 1165
||||||
Sbjct 1140 GCTTTC 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59487645825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5