BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921527
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1544 0.0
AT1G27020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 915 0.0
> AT1G27030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G27020.1);
Has 504 Blast hits to 502 proteins in 169 species: Archae
- 0; Bacteria - 299; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 138 (source: NCBI BLink). | chr1:9381803-9383984
FORWARD LENGTH=1244
Length=1244
Score = 1544 bits (836), Expect = 0.0
Identities = 926/971 (95%), Gaps = 0/971 (0%)
Strand=Plus/Plus
Query 4 CTCAGAAACAACTCCAAGATGGGTTCCTTTGACTTGCCTCACAGTTCATCGTTCAAGGGA 63
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 22 CTCAGAAACAACTCAAACATGGGTTCCTTCGACTTGCCTCACAGTTCATCGTTCAAGGGA 81
Query 64 GGAAGTGAAACATTTCTTCGGAATGTGTTCGAGAATATACTGAAAACGTATCTAAGGAAG 123
| |||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 82 GAAAGTGAAATATTTCTTCGGAATGTGTTCGAGAATATATTGAAAACGTACCTAAGGAAG 141
Query 124 AACCCAACGGCGAAGACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATATGC 183
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 142 AACCCGACGGCGAAGACAATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATCTGC 201
Query 184 TACGACCACTTCACTTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTGTCG 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 TACGACCACTTCACTTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTGTCG 261
Query 244 AGTTTTTTCATGGATTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAA 303
||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 262 AGTTTTTTCATGGCTTATGGATATAAAATTGGTGGTGGACTTGATTTTCCCAAGAAGAAA 321
Query 304 CTACGAGTTCTTTGGTTTTCTCCTCCCGATGTCCACGTCCCTAAAGACGGCCACGGTCTA 363
||||||||||||||||||||||| || ||||| ||||| ||||| || || |||||||||
Sbjct 322 CTACGAGTTCTTTGGTTTTCTCCACCTGATGTTCACGTTCCTAATGATGGTCACGGTCTA 381
Query 364 GGCAATGGCCTTTTGCCGCGAATTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCT 423
||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 382 GGCAACGGCCCTTTGCCGCGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCT 441
Query 424 GAATCACAGGGGATAATAAGGAAGTATTTGAAACCAGAAGGTGGCAAGCAAGCGGTTCTT 483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 442 GAATCACAGGGGATAATAAGGAAGTATTTGAAACAAGAAGGTGGCAAGCAAGCGGTTCTT 501
Query 484 TCTAGTACTTTGGAGTCTTTAATATGGGAGAAGCCTACATGGATTGACTTCAAGCAACTT 543
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 502 TCTAGTACTTTGGGGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAGCTT 561
Query 544 GCCAAAGAAAGCGAAATTGCGGCATGGACGCTTATCCACGGCTACACACTGAATCATCTT 603
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 562 GCCAAAGAAAGCGAATTTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCATCTT 621
Query 604 GCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAACAT 663
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 622 GCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGACATCAAATTCGTCAAACAGCGT 681
Query 664 CTTGAAGAAAAGGGATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGAT 723
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CTTGAGGAAAAGGGATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGAT 741
Query 724 GGTCTACTGCTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGGA 783
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 GGTCTACTATTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGGA 801
Query 784 GTAACTGAAACAATCCCAGCTTCGTACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAG 843
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 802 GTAACTGAAACAATCCCAGCTTCATACATTGAATTCACTCAGCGTCAAGTTCTTCCAGAG 861
Query 844 TTCAAAGATGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTC 903
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TTCAAAGATGTGCCGCTTGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTC 921
Query 904 GATAACGCCAGCAACATAATGGAAAGCACCCGTTTCACAACCAAATTCTAGAGCCAGACT 963
|||||||||| | || ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 922 GATAACGCCAACCACGTAATGGAAAGCACCCGTTTCACAACTAAATTCTAGAACCAGACT 981
Query 964 TGTCTTGCTCG 974
|||||||||||
Sbjct 982 TGTCTTGCTCG 992
> AT1G27020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G27030.1);
Has 514 Blast hits to 514 proteins in 175 species: Archae
- 0; Bacteria - 311; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 138 (source: NCBI BLink). | chr1:9378559-9380692
FORWARD LENGTH=1276
Length=1276
Score = 915 bits (495), Expect = 0.0
Identities = 812/963 (84%), Gaps = 29/963 (3%)
Strand=Plus/Plus
Query 22 ATGGGTTCCT-TTGACTTGCCTCACAG-TTCATCGTTCAAGGGAGGAAGTGAAACATTTC 79
||||||| || ||||||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 77 ATGGGTT-CTCTTGACTTGCCTTAC-GCTTCATCGTTCAAGGGAGGAAGTGAAACCTTTC 134
Query 80 TTCGGAATGTGTTCGAGAA-TATACTGAAAACGTATCTAAGGAAGAACCCAACGGCGAAG 138
| | |||||| || || || |||||||||||||||| | ||||||||||| | |||||||
Sbjct 135 TCCAGAATGTATTTGA-AAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAG 193
Query 139 ACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATATGC-TACGACCACTTCAC 197
|||||||||||||| ||| ||||| |||||||||||||||| | | ||||||||||||
Sbjct 194 ACGATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCT-CTTACGACCACTTCTT 252
Query 198 TTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTGTCGAGTTTTTTCATGGA 257
|||||||||| | |||||||||||||||||||| || ||| || ||||||||||||||||
Sbjct 253 TTTCAGGACATTTAAGGTCGATGGTTATGGAATTGATTCCCTGGCGAGTTTTTTCATGGA 312
Query 258 TTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAACTACGAGTTCTTTG 317
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||
Sbjct 313 TTATGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTG 372
Query 318 GTTTTCTCCTCCCGATGTCCACGTCCCTAA-AGACGGCCACGGTCTAGGCAATGGCCTTT 376
| |||||||||| ||||| ||| |||| | | | || ||||| | |||||||||| ||
Sbjct 373 GCTTTCTCCTCCGGATGTTCACTTCCCCGATA-ATGGTTACGGTATTGGCAATGGCCCTT 431
Query 377 TGCCGCGAATTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGA 436
|||| || |||||||||||||| |||||||||| |||||||||||||| ||||||| ||
Sbjct 432 TGCCAAGACTTGTTATAGCTGAGCTTCTTGTGGAGGAACTAAGCCCTGAGTCACAGGAGA 491
Query 437 TAATAAGGAAGTATTTGAAACCAGAAGGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGG 496
|||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||
Sbjct 492 TAATAAGGAAGTATTTGAAACCGGAAGGTGGTAAGCAAGCTGTTCTTTCAAGTACTTTGG 551
Query 497 AGTCTTTAATATGGGAGAAGCCTACATGGATTGACTTCAAGCAACTTGCCAAAGAAAGCG 556
||||||||| ||||||||||| |||| | || ||||| |||||||||||||||||||
Sbjct 552 GGTCTTTAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCCAAAGAAAGCG 611
Query 557 AAATTGCGGCATGGACGCTTATCCACGGCTACACACTGAATCATCTTGCTTTTGCGGTTC 616
|| |||| |||||||||||| || ||||||||||| |||| ||||||||||| |||||||
Sbjct 612 AATTTGCCGCATGGACGCTTGTCTACGGCTACACAATGAACCATCTTGCTTTCGCGGTTC 671
Query 617 ATCGA-TTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAACATCTTGAAGAAAAG 675
|||| || ||||| |||||||| || ||||||| ||||||| | || ||||||||||
Sbjct 672 ATCGTCTT-AAACACCGTTTCAGCGACATCAAATGCGTCAAAGAGTATTTTGAAGAAAAC 730
Query 676 GGATTCAAACTCAACA-GTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTGCT 734
|| ||| ||||||||| | || |||| | |||||||||||||| |||| |||||||| |
Sbjct 731 GGTTTCGAACTCAACAAG-GATGGAGGAGTCCTCAAAGTGAGTGAAGACAGTCTACTG-T 788
Query 735 T-CAAGTTTCATCGATCTCGGA-AAGGCTTCCGGTA-ACATTTGCAGATGGAGTAACTGA 791
| ||||| || | || ||||| || ||| ||| | ||||||||| ||||||||| |
Sbjct 789 TACAAGTGTCGGCTATGTCGGAGAAA-CTTGTGGTTGA-ATTTGCAGACGGAGTAACTCA 846
Query 792 AA-CAATCCCAGCTTCGTACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAGTTCAAAG 850
|| | |||| ||||| |||||||||||| | |||||| |||||||||| |||||||||
Sbjct 847 AATCG-TCCCGGCTTCATACATTGAGTTCGTTGAACGTCTAGTTCTTCCACAGTTCAAAG 905
Query 851 ATGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAG-CTTTTGAACTCGATAAC 909
|| ||||| ||||||||||||||| ||||||||||| || | ||| || | | || |
Sbjct 906 ATATGCCGTGTGATGAGATCAAAGAGTTTCATAGACGCGAGGGCTTG-GAGCAAGCTAGC 964
Query 910 GCC-AGCAACATAATGGAAAGCACCCGTTTCACAACC-AAATTCTAGAGCCAGACTTGTC 967
||| | || ||||||||||||||||||||||||| | |||| |||| |||| |||||
Sbjct 965 GCCTACCA-CATAATGGAAAGCACCCGTTTCACAGCGTAAATA-TAGAACCAG-CTTGTT 1021
Query 968 TTG 970
|||
Sbjct 1022 TTG 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5