BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921528
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1633 0.0
AT1G27020.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 965 0.0
> AT1G27030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G27020.1);
Has 504 Blast hits to 502 proteins in 169 species: Archae
- 0; Bacteria - 299; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 138 (source: NCBI BLink). | chr1:9381803-9383984
FORWARD LENGTH=1244
Length=1244
Score = 1633 bits (884), Expect = 0.0
Identities = 944/974 (97%), Gaps = 0/974 (0%)
Strand=Plus/Plus
Query 1 TTTCTCAGAAACAACTCCAAGATGGGTTCCTTTGACTTGCCTCACAGTTCATCGTTCAAG 60
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 19 TTTCTCAGAAACAACTCAAACATGGGTTCCTTCGACTTGCCTCACAGTTCATCGTTCAAG 78
Query 61 GGAGGAAGTGAAACATTTCTTCGGAATGTGTTCGAGAATATACTGAAAACGTATCTAAGG 120
|||| |||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 79 GGAGAAAGTGAAATATTTCTTCGGAATGTGTTCGAGAATATATTGAAAACGTACCTAAGG 138
Query 121 AAGAACCCGACGGCGAAGACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 139 AAGAACCCGACGGCGAAGACAATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATC 198
Query 181 TGCTACGACCACTTCACTTTCAGGACATTAAAGGTCGATGGCTATGGAATAGACTCCTTG 240
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 199 TGCTACGACCACTTCACTTTCAGGACACTAAAGGTCGATGGTTATGGAATAGACTCCTTG 258
Query 241 TCGAGTTTTTTCATGGATTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAG 300
|||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 259 TCGAGTTTTTTCATGGCTTATGGATATAAAATTGGTGGTGGACTTGATTTTCCCAAGAAG 318
Query 301 AAACTACGAGTTCTTTGGTTTTCTCCACCCGATGTTCACGTCCCTAATGACGGTCACGGT 360
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 319 AAACTACGAGTTCTTTGGTTTTCTCCACCTGATGTTCACGTTCCTAATGATGGTCACGGT 378
Query 361 CTAGGCAACGGCCCTTTCCCACGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGC 420
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTAGGCAACGGCCCTTTGCCGCGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGC 438
Query 421 CCTGAATCACAGGGGATAATAAGGAAGTATTTGAAACCAGGTGGTGGCAAGCAAGCGGTT 480
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 439 CCTGAATCACAGGGGATAATAAGGAAGTATTTGAAACAAGAAGGTGGCAAGCAAGCGGTT 498
Query 481 CTTTCTAGTACTTTGGGGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CTTTCTAGTACTTTGGGGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAG 558
Query 541 CTTGCCAAAGAAAGCGAAATTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCAT 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 559 CTTGCCAAAGAAAGCGAATTTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCAT 618
Query 601 CTTGCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAG 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 619 CTTGCTTTTGCGGTTCATCGATTCAAACATCGTTTCAGTGACATCAAATTCGTCAAACAG 678
Query 661 CATCTTGAGGAAAAGGGATACAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAA 720
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CGTCTTGAGGAAAAGGGATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAA 738
Query 721 GATGGTCTACTATTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGAT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GATGGTCTACTATTTCAAGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGAT 798
Query 781 GGAGTAACTGAAACAATCCCAGCTTCATACATTGAGTTCACTCAACGTCAAGTTCTTCCA 840
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 799 GGAGTAACTGAAACAATCCCAGCTTCATACATTGAATTCACTCAGCGTCAAGTTCTTCCA 858
Query 841 GAGTTCAAAGATGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAA 900
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GAGTTCAAAGATGTGCCGCTTGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAA 918
Query 901 CTCGATAACGCCAACCACGTAATGGAAAGCACCCGTTTCACAACCAAATTCTAGAACCAG 960
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 919 CTCGATAACGCCAACCACGTAATGGAAAGCACCCGTTTCACAACTAAATTCTAGAACCAG 978
Query 961 ACTTGTCTTGCTCG 974
||||||||||||||
Sbjct 979 ACTTGTCTTGCTCG 992
> AT1G27020.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G27030.1);
Has 514 Blast hits to 514 proteins in 175 species: Archae
- 0; Bacteria - 311; Metazoa - 0; Fungi - 0; Plants - 65; Viruses
- 0; Other Eukaryotes - 138 (source: NCBI BLink). | chr1:9378559-9380692
FORWARD LENGTH=1276
Length=1276
Score = 965 bits (522), Expect = 0.0
Identities = 819/961 (85%), Gaps = 25/961 (3%)
Strand=Plus/Plus
Query 22 ATGGGTTCCT-TTGACTTGCCTCACAG-TTCATCGTTCAAGGGAGGAAGTGAAACATTTC 79
||||||| || ||||||||||| || | ||||||||||||||||||||||||||| ||||
Sbjct 77 ATGGGTT-CTCTTGACTTGCCTTAC-GCTTCATCGTTCAAGGGAGGAAGTGAAACCTTTC 134
Query 80 TTCGGAATGTGTTCGAGAA-TATACTGAAAACGTATCTAAGGAAGAACCCGACGGCGAAG 138
| | |||||| || || || |||||||||||||||| | ||||||||||||| |||||||
Sbjct 135 TCCAGAATGTATTTGA-AAGTATACTGAAAACGTATTTGAGGAAGAACCCGATGGCGAAG 193
Query 139 ACGATATGGGAACTGGTTCAGTCGTTGGACAACGAAAAGATCTGC-TACGACCACTTCAC 197
|||||||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||
Sbjct 194 ACGATATGGGAACTAGTTAAGTCGGTGGACAACGAAAAGATCT-CTTACGACCACTTCTT 252
Query 198 TTTCAGGACATTAAAGGTCGATGGCTATGGAATAGACTCCTTGTCGAGTTTTTTCATGGA 257
|||||||||||| ||||||||||| |||||||| || ||| || ||||||||||||||||
Sbjct 253 TTTCAGGACATTTAAGGTCGATGGTTATGGAATTGATTCCCTGGCGAGTTTTTTCATGGA 312
Query 258 TTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAACTACGAGTTCTTTG 317
||||||||||||| ||||||| ||||||||||||||||||||||| ||| |||||| ||
Sbjct 313 TTATGGATATAAAGTTGGAGGCAGACTTGATTTTCCAAAGAAGAAAGTACAAGTTCTCTG 372
Query 318 GTTTTCTCCACCCGATGTTCACGTCCCTAATGACGGTCACGGTCTAGGCAACGGCCCTTT 377
| ||||||| || ||||||||| |||| || | ||| ||||| | ||||| ||||||||
Sbjct 373 GCTTTCTCCTCCGGATGTTCACTTCCCCGATAATGGTTACGGTATTGGCAATGGCCCTTT 432
Query 378 CCCACGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGAT 437
||| ||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||
Sbjct 433 GCCAAGACTTGTTATAGCTGAGCTTCTTGTGGAGGAACTAAGCCCTGAGTCACAGGAGAT 492
Query 438 AATAAGGAAGTATTTGAAACCAGGT-GGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGG 496
||||||||||||||||||||| || ||||| |||||||| |||||||| ||||||||||
Sbjct 493 AATAAGGAAGTATTTGAAACC-GGAAGGTGGTAAGCAAGCTGTTCTTTCAAGTACTTTGG 551
Query 497 GGTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAACTTGCCAAAGAAAGCG 556
|||||||||| ||||||||||| |||| ||||| ||||| |||||||||||||||||||
Sbjct 552 GGTCTTTAATTTGGGAGAAGCCAACATCCACCGATTTCAATCAACTTGCCAAAGAAAGCG 611
Query 557 AAATTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCATCTTGCTTTTGCGGTTC 616
|| |||| |||||||||||| || |||||||||||||||| ||||||||||| |||||||
Sbjct 612 AATTTGCCGCATGGACGCTTGTCTACGGCTACACAATGAACCATCTTGCTTTCGCGGTTC 671
Query 617 ATCGA-TTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAGCATCTTGAGGAAAAG 675
|||| || ||||| |||||||| || ||||||| ||||||| || || |||| |||||
Sbjct 672 ATCGTCTT-AAACACCGTTTCAGCGACATCAAATGCGTCAAAGAGTATTTTGAAGAAAAC 730
Query 676 GGATACAAACTCAACA-GTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTATT 734
|| | | ||||||||| | || |||| | |||||||||||||| |||| ||||||| ||
Sbjct 731 GGTTTCGAACTCAACAAG-GATGGAGGAGTCCTCAAAGTGAGTGAAGACAGTCTACTGTT 789
Query 735 TCAAGTTTCATCGATCTCGGA-AAGGCTTCCGGTA-ACATTTGCAGATGGAGTAACTGAA 792
||||| || | || ||||| || ||| ||| | ||||||||| ||||||||| ||
Sbjct 790 ACAAGTGTCGGCTATGTCGGAGAAA-CTTGTGGTTGA-ATTTGCAGACGGAGTAACTCAA 847
Query 793 A-CAATCCCAGCTTCATACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAGTTCAAAGA 851
| | |||| |||||||||||||||||| | |||||| |||||||||| ||||||||||
Sbjct 848 ATCG-TCCCGGCTTCATACATTGAGTTCGTTGAACGTCTAGTTCTTCCACAGTTCAAAGA 906
Query 852 TGTGCCGCATGATGAGATCAAAGAATTTCATAGACGTGAAG-CTTTTGAACTCGATAACG 910
| ||||| ||||||||||||||| ||||||||||| || | ||| || | | || ||
Sbjct 907 TATGCCGTGTGATGAGATCAAAGAGTTTCATAGACGCGAGGGCTTG-GAGCAAGCTAGCG 965
Query 911 CCAACCACGTAATGGAAAGCACCCGTTTCACAACC-AAATTCTAGAACCAGACTTGTCTT 969
|| ||||| ||||||||||||||||||||||| | |||| ||||||||| ||||| ||
Sbjct 966 CCTACCACATAATGGAAAGCACCCGTTTCACAGCGTAAATA-TAGAACCAG-CTTGTTTT 1023
Query 970 G 970
|
Sbjct 1024 G 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5