BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921530

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27008.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   207    6e-53


> AT1G27008.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown. | chr1:9376788-9377244 
REVERSE LENGTH=288
Length=288

 Score =  207 bits (112),  Expect = 6e-53
 Identities = 157/178 (88%), Gaps = 6/178 (3%)
 Strand=Plus/Plus

Query  22   ATGACTTCCCCTCCTTCTCTCTTCGCTGTTT-CCC--CAGCCGCCGCAGCAGCAAATTTG  78
            ||||| ||||||||||||| ||||||| ||| |||  ||||||||| ||||||| |||||
Sbjct  1    ATGACATCCCCTCCTTCTCCCTTCGCTATTTCCCCTGCAGCCGCCGTAGCAGCAGATTTG  60

Query  79   TCTGATGACCCTGACCTAACCATCGTTGGTTTCTTGAAGTCACCAGATTCGTTACCACTC  138
             || ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  61   CCTAATGACCCTGACCTGACCATCGTTGGTTTCTTGAAGTCACCAGATTCATTACCACTC  120

Query  139  TATTTCCTAATCGCAATGATCGTTTACATCGTC-CAACTCCGA-TACTGCAACTGCAG  194
            ||| || |||||| |||||||||||||| |||| | | ||| | ||||||||||||||
Sbjct  121  TATCTCTTAATCGGAATGATCGTTTACACCGTCTCTATTCC-ACTACTGCAACTGCAG  177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5