BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921531
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27000.1 | Symbols: | Protein of unknown function (DUF1664)... 1567 0.0
> AT1G27000.1 | Symbols: | Protein of unknown function (DUF1664)
| chr1:9373926-9376720 FORWARD LENGTH=1355
Length=1355
Score = 1567 bits (848), Expect = 0.0
Identities = 928/967 (96%), Gaps = 3/967 (0%)
Strand=Plus/Plus
Query 1 TGTAAAAATCAGTCGGAGCTATGGCGATGCATGCTGGAGTTGGCTTATCCAGGATCTTTC 60
||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 124 TGTAAAAAT-AGTCGGAGCTATGGCGATGCAGGCCGGAGTTGGCTTATCCAGGATCTTTC 182
Query 61 TCTTAGCCGGAGCAGGTTATACTGGTACGATCATGATGAAGAACGGCAAATTGTCAGATT 120
||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||||
Sbjct 183 TCTTAGCCGGAGCAGGTTACACTGGTACGATCATGATGAAGAATGGAAAATTGTCGGATT 242
Query 121 TGTTGGGTGAATTGCAGGGTCTT-GTGAAGGGAATGGAGAAATCTGGAGAAGGATCTGAA 179
||||||||||||||||| || || ||||||||||||||||||||||||||||| |||||
Sbjct 243 TGTTGGGTGAATTGCAGAGT-TTGGTGAAGGGAATGGAGAAATCTGGAGAAGGGTCTGAG 301
Query 180 GGAGATTCTGATGTTTCTGATGCTATAGCTGCCCAGGTTCGTCGATTGGCTATGGAGGTT 239
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||| ||
Sbjct 302 GGAGATTCTGATGTTTCTGATGCTATAGCTGCACAGGTTCGCCGGTTGGCTATGGAGATT 361
Query 240 CGACAGCTAGCTTCGCAGCAGCACATAACTGTCATGAATGGAGTTTCTGGTGCAAACCTA 299
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 362 CGACAGCTAGCTTCGCAGCAACACATAACGGTCATGAATGGAGTTTCTGGTGCAAACCTA 421
Query 300 CAAGCCCTTGCTTTTCCTGCTGCGGCATTGGGAGCTCTCGGATATGGTTATATGTGGTGG 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CAAGCCCTTGCTGTTCCTGCTGCGGCATTGGGAGCTCTCGGATATGGTTATATGTGGTGG 481
Query 360 AAGGGACTCTCATTCACTGACCTTATGTATGTGACAAAAGCCAACATGGCTGCTGCCGTG 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 482 AAGGGACTCTCATTCACTGACCTTATGTATGTGACAAAAGCCAACATGGCTGCTGCAGTG 541
Query 420 GCTAACTTGATAAAGAATCTGGAGCAAGTTTCTGAGACAGTTGCGGCTGCGAAAAGGCAT 479
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 542 GCTAACTTGACAAAGAATCTGGAGCAAGTTTCTGAGACTCTTGCGGCTGCGAAAAGGCAT 601
Query 480 TTAACACAAAGGATTCAGAATGTGGATGATAAGGTAGAAAAGCAGATTGATCTCTCCAAG 539
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||
Sbjct 602 TTAACACAAAGGATTCAGAATCTGGATGATAAGGTAGAAAAGCAGATCGATCTCTCGAAG 661
Query 540 GAAATCAATAGCCAGGTCATTGCTGCTCGTGAGAATATCAACTCACTTGAGATGGATTTG 599
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||
Sbjct 662 GAAATCAATAGCCAGGTTATTTCTGCTCGTGAGAATATCAGCTCACTTGAGATGGATTTG 721
Query 600 GAATCATTGCATAATTTGATTACTGGACTGGATGGGAAGTTGGACACGCTAGAATACAAG 659
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 722 GAATCATTGCATAATTTGATTACTGGACTGGATGGGAAGTTGGACACGCTGGAATACAAG 781
Query 660 CAGGATGTCACAAATGTTTTCATGCTACACTTGTATAACTATTTTGGAGGCAAGAGCACA 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 CAGGATGTCACAAATGTTTTCATGCTAAACTTGTATAACTATTTTGGAGGCAAGAGCACA 841
Query 720 AAACTGCCTGAAATGGAACAGCTTCAGCTTCCTGTAAACCAGAGGGCTCGTAATTTGCTT 779
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AAGCTGCCTGAAATGGAACAGCTTCAGCTTCCTGTAAACCAGAGGGCTCGTAATTTGCTT 901
Query 780 GCAGATGTTGAAACCAAGGGTCTGAAAAACTTGACTGAAGAGCTGTTTGAAAGCAATGGC 839
|||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 902 GCAGATGTTGAAACTAAGGGTCTGAAAAACTTGGCTGAAGAGCTGTTTAAAAGCAATGGC 961
Query 840 GCACAGGTGACAACCACAGTGAAACAAATCAGTTTGAGTAAGGTCAATGTGAAGTCGAGG 899
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 962 ACACAGGTGACAACCACAGTGAAACAAATCAGTTTGAGTAAAGTGAATGTGAAGTCGAGG 1021
Query 900 CCATTGTTATCAAGGGCTGCTTCAGCTAGGTGTTGATATGGAAGTTTTCCTGATGGCGGT 959
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1022 CCATTGTTATCAAGGGCTGCTTCAGCTAAGTGTTGATATGGAAGTTTTCCTGATGGCGGT 1081
Query 960 TTGGCTT 966
|||||||
Sbjct 1082 TTGGCTT 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5