BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921535

Length=1801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmj...   268    1e-70


> AT3G07610.3 | Symbols: IBM1 | Transcription factor jumonji (jmjC) 
domain-containing protein | chr3:2426069-2432913 FORWARD 
LENGTH=3266
Length=3266

 Score =  268 bits (145),  Expect = 1e-70
 Identities = 209/241 (87%), Gaps = 0/241 (0%)
 Strand=Plus/Plus

Query  712   CTTTTGGATTTACCTGAAACGGTTATGGAGCGATGCCCTTGTTTTAACTCTCATGGTCAT  771
             |||||| ||||||||||||||||| |||||||||||||||||| ||||||| |  | |||
Sbjct  1460  CTTTTGAATTTACCTGAAACGGTTTTGGAGCGATGCCCTTGTTCTAACTCTGACAGACAT  1519

Query  772   ATTGATAAAGCCAACAATAAAAGGTTAAAGGCTGCTTGTCGAGAAGGTTCAGAAGACAAT  831
             ||||| | || || |  |||   |||||| ||||||||||||||||||||||||||||||
Sbjct  1520  ATTGACATAGACAGCTGTAATTTGTTAAAAGCTGCTTGTCGAGAAGGTTCAGAAGACAAT  1579

Query  832   TATCTATATTGTCCAAGTGTAAGAGATGTTCAAAAAGATGATTTGAAGCATTTTCAGCAT  891
             ||||| || | |||||||||| | ||||||||| ||||||||||||||||||||||||| 
Sbjct  1580  TATCTTTACTCTCCAAGTGTATGGGATGTTCAACAAGATGATTTGAAGCATTTTCAGCAC  1639

Query  892   CACTGGGTAAAAGGTGAGCCTGTGGTTGTGAGGAATGCGCTCGAAGTTACACCTGGTTTA  951
             || ||||||||||| ||||||||| ||||||| |||| ||| |||| |||| ||||||||
Sbjct  1640  CATTGGGTAAAAGGCGAGCCTGTGATTGTGAGAAATGTGCTTGAAGCTACATCTGGTTTA  1699

Query  952   A  952
             |
Sbjct  1700  A  1700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 89105967375


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5