BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921543
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e fam... 1170 0.0
AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated ge... 833 0.0
AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein... 789 0.0
> AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e family
protein | chr1:9321650-9322965 FORWARD LENGTH=877
Length=877
Score = 1170 bits (633), Expect = 0.0
Identities = 674/694 (97%), Gaps = 2/694 (0%)
Strand=Plus/Plus
Query 15 CAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCC 74
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 53 CAACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAGCCATACCC 112
Query 75 AAAATCAAGATACTGTCGTGGTGTTCCCGATCCAAAGATCAGGATTTACGATGTTGGTAT 134
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 113 TAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGATGTTGGTAT 172
Query 135 GAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAAAGA 194
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 173 GAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTGGTTTCATGGGAGAAAGA 232
Query 195 GAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAA 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAA 292
Query 255 ATCTGCGGGGAAAGATGC-TTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTA 313
||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 293 GTCTGCCGGGAAAGATGCGTTT-CATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTA 351
Query 314 GGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTG 373
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GGATCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTG 411
Query 374 CTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTCTG 433
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 412 CTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTTCTTTTGTCTG 471
Query 434 TGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTA 493
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 472 TGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTA 531
Query 494 AGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAACC 553
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 532 AGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACC 591
Query 554 GTGCTGATTACACAAAGCTAAGGCAAGAGAAGCGGATTGTCCCTGATGGTGTCAACGCCA 613
|||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 592 GTGCTGATTACACAAAGCTAAGGCAAGAGAAGAGGATTGTCCCTGATGGTGTAAATGCCA 651
Query 614 AGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAG 673
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 652 AGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAG 711
Query 674 CTGGTGCACAGTGATGCAGATGACTTGTGGATGT 707
|||||||||||||||||||||||||||| |||||
Sbjct 712 CTGGTGCACAGTGATGCAGATGACTTGTCGATGT 745
> AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated
gene 24 | chr1:24839165-24840612 FORWARD LENGTH=882
Length=882
Score = 833 bits (451), Expect = 0.0
Identities = 594/664 (89%), Gaps = 6/664 (1%)
Strand=Plus/Plus
Query 14 CCAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 73
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 CCAACACGATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 95
Query 74 CAAAATCAAGATACTGTCGTGGTGTTCCCGAT-CCAAAGATCAGGATTTACGATGTTGGT 132
| |||||| |||||||||||||||| || ||| ||||| |||||||| ||||||||||||
Sbjct 96 CGAAATCACGATACTGTCGTGGTGTGCCAGATCCCAAA-ATCAGGATCTACGATGTTGGT 154
Query 133 ATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAA 191
|||||||||||||| ||||||||| |||| || |||||||||||| ||||||||||||||
Sbjct 155 ATGAAGAGGAAAGGTGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATGGGAGAA 213
Query 192 AGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGT 251
||||||||| ||||||||||| |||||||| || ||||||||||| |||||||| |||||
Sbjct 214 AGAGAATGTGTCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGT 273
Query 252 GAAATCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCT 311
||||||||| |||||||||||||| ||| | | ||||| ||||||||||||||||||||
Sbjct 274 GAAATCTGCTGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT 333
Query 312 TAGGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGG 371
|||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 334 CAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGG 393
Query 372 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTC 431
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 394 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTC 453
Query 432 TGTGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTT 491
||| || || || ||| ||||||| |||||||||||| ||||||||| | ||||||||
Sbjct 454 TGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTT 513
Query 492 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAA 551
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 514 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAA 573
Query 552 CCGTGCTGATTACACAAAGCTAAG-GCAAGAGAAGCGGATTGTCCCTGATGGTGTCAACG 610
||||||||| ||||| ||||| || || | |||| ||||||| |||||||||||||| |
Sbjct 574 CCGTGCTGAGTACACGAAGCTGAGAGCGAT-GAAGAGGATTGTGCCTGATGGTGTCAATG 632
Query 611 CCAAGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGT 670
| ||||| ||||| |||||||| |||||||||||||| || |||||||| ||| | |
Sbjct 633 CTAAGTTTCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTTCATAT 692
Query 671 CAGC 674
||||
Sbjct 693 CAGC 696
> AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein
L16p/L10e family protein | chr1:4888214-4889661 FORWARD LENGTH=972
Length=972
Score = 789 bits (427), Expect = 0.0
Identities = 586/663 (88%), Gaps = 10/663 (2%)
Strand=Plus/Plus
Query 17 ACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCAA 76
|||| ||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 52 ACGCCATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAA 111
Query 77 AATCAAGATACTGTCGTGGTGTTCCCGATCCAAAGATCAGGATTTACGATGTTGGTATGA 136
| || | |||||||||||||| || |||||||| |||||||| ||||||||||||||||
Sbjct 112 AGTCTCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGA 171
Query 137 AGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAAAGAG 195
||||||| || ||||||||| |||| || |||||| ||||| || ||||||||||| |||
Sbjct 172 AGAGGAAGGGTGTTGATGAGTTTCCATT-CTGTGTCCATTTGGTGTCATGGGAGAAGGAG 230
Query 196 AATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAAA 255
||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 231 AATGTGTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAG 290
Query 256 TCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTAGG 315
||||| || ||||||||||| ||| | | ||||| |||||||||||||||||||| |||
Sbjct 291 TCTGCTGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGG 350
Query 316 ATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTGCT 375
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 351 ATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCT 410
Query 376 TTTGGTAAAGCTCTTGG-TACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTCTGT 434
|||||||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||
Sbjct 411 TTTGGTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGT 469
Query 435 GAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAA 494
| ||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| ||
Sbjct 470 TCGTTGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAA 529
Query 495 GTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAACCG 554
||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| |
Sbjct 530 GTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAG 589
Query 555 TGCTGA-TTACACAAAGCTAAGGCAAGAGAAGCG-GATTGTCCCTGATGGTGTCAACGCC 612
||||| || ||| ||| | |||||||||||||| | ||||||||||||||||||||||
Sbjct 590 AGCTGACTT-CACCAAGTTGAGGCAAGAGAAGCGTG-TTGTCCCTGATGGTGTCAACGCT 647
Query 613 AAGTTCCTATCTTGCCATGGTC-TGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTC 671
|||||||| || |||||||| | | ||||||||||||||||| |||||||| || ||| |
Sbjct 648 AAGTTCCTCTCATGCCATGGACCT-TTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCC 706
Query 672 AGC 674
|||
Sbjct 707 AGC 709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5