BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921543 Length=707 Score E Sequences producing significant alignments: (Bits) Value AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e fam... 1170 0.0 AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated ge... 833 0.0 AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein... 789 0.0 > AT1G26910.1 | Symbols: RPL10B | Ribosomal protein L16p/L10e family protein | chr1:9321650-9322965 FORWARD LENGTH=877 Length=877 Score = 1170 bits (633), Expect = 0.0 Identities = 674/694 (97%), Gaps = 2/694 (0%) Strand=Plus/Plus Query 15 CAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCC 74 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 53 CAACGCGATGGGACGAAGACCTGCGAGATGTTACCGTCAAATTAAGGGAAAGCCATACCC 112 Query 75 AAAATCAAGATACTGTCGTGGTGTTCCCGATCCAAAGATCAGGATTTACGATGTTGGTAT 134 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 113 TAAATCAAGATACTGTCGTGGTGTTCCCGATCCTAAGATCAGGATTTACGATGTTGGTAT 172 Query 135 GAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAAAGA 194 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 173 GAAGAGGAAAGGAGTTGATGAGTTCCCTTACTGTGTTCATTTGGTTTCATGGGAGAAAGA 232 Query 195 GAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAA 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233 GAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAA 292 Query 255 ATCTGCGGGGAAAGATGC-TTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTA 313 ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 293 GTCTGCCGGGAAAGATGCGTTT-CATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTA 351 Query 314 GGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTG 373 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GGATCAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTG 411 Query 374 CTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTCTG 433 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 412 CTTTTGGCAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATTGGACAGGTTCTTTTGTCTG 471 Query 434 TGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTA 493 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 472 TGAGGTGCAAAGATGCTCATGGTCATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTA 531 Query 494 AGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAACC 553 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 532 AGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGGTTCACCAAGTTTAACC 591 Query 554 GTGCTGATTACACAAAGCTAAGGCAAGAGAAGCGGATTGTCCCTGATGGTGTCAACGCCA 613 |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||| Sbjct 592 GTGCTGATTACACAAAGCTAAGGCAAGAGAAGAGGATTGTCCCTGATGGTGTAAATGCCA 651 Query 614 AGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAG 673 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 652 AGTTCCTATCTTGCCATGGTCCGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTCAG 711 Query 674 CTGGTGCACAGTGATGCAGATGACTTGTGGATGT 707 |||||||||||||||||||||||||||| ||||| Sbjct 712 CTGGTGCACAGTGATGCAGATGACTTGTCGATGT 745 > AT1G66580.1 | Symbols: SAG24, RPL10C | senescence associated gene 24 | chr1:24839165-24840612 FORWARD LENGTH=882 Length=882 Score = 833 bits (451), Expect = 0.0 Identities = 594/664 (89%), Gaps = 6/664 (1%) Strand=Plus/Plus Query 14 CCAACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 73 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36 CCAACACGATGGGACGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACC 95 Query 74 CAAAATCAAGATACTGTCGTGGTGTTCCCGAT-CCAAAGATCAGGATTTACGATGTTGGT 132 | |||||| |||||||||||||||| || ||| ||||| |||||||| |||||||||||| Sbjct 96 CGAAATCACGATACTGTCGTGGTGTGCCAGATCCCAAA-ATCAGGATCTACGATGTTGGT 154 Query 133 ATGAAGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAA 191 |||||||||||||| ||||||||| |||| || |||||||||||| |||||||||||||| Sbjct 155 ATGAAGAGGAAAGGTGTTGATGAGTTTCCATT-CTGTGTTCATTTGGTTTCATGGGAGAA 213 Query 192 AGAGAATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGT 251 ||||||||| ||||||||||| |||||||| || ||||||||||| |||||||| ||||| Sbjct 214 AGAGAATGTGTCAAGTGAAGCACTTGAAGCAGCACGTATTGCTTGCAACAAGTATATGGT 273 Query 252 GAAATCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCT 311 ||||||||| |||||||||||||| ||| | | ||||| |||||||||||||||||||| Sbjct 274 GAAATCTGCTGGGAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCT 333 Query 312 TAGGATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGG 371 |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| Sbjct 334 CAGGATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGAATGAGAGG 393 Query 372 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTC 431 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 394 TGCTTTTGGTAAAGCTCTTGGTACTTGTGCTAGAGTTGCGATTGGACAGGTTCTTTTGTC 453 Query 432 TGTGAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTT 491 ||| || || || ||| ||||||| |||||||||||| ||||||||| | |||||||| Sbjct 454 TGTTAGGTGTAAGGATAATCATGGAGTTCATGCTCAGGAAGCTCTTCGTAGAGCTAAGTT 513 Query 492 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAA 551 ||||||||||||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 514 TAAGTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACTAAATTCAA 573 Query 552 CCGTGCTGATTACACAAAGCTAAG-GCAAGAGAAGCGGATTGTCCCTGATGGTGTCAACG 610 ||||||||| ||||| ||||| || || | |||| ||||||| |||||||||||||| | Sbjct 574 CCGTGCTGAGTACACGAAGCTGAGAGCGAT-GAAGAGGATTGTGCCTGATGGTGTCAATG 632 Query 611 CCAAGTTCCTATCTTGCCATGGTCTGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGT 670 | ||||| ||||| |||||||| |||||||||||||| || |||||||| ||| | | Sbjct 633 CTAAGTTTCTATCAAACCATGGTCCATTGGCTAACCGTCAACCTGGAAGTGCCTTCATAT 692 Query 671 CAGC 674 |||| Sbjct 693 CAGC 696 > AT1G14320.1 | Symbols: SAC52, RPL10, RPL10A | Ribosomal protein L16p/L10e family protein | chr1:4888214-4889661 FORWARD LENGTH=972 Length=972 Score = 789 bits (427), Expect = 0.0 Identities = 586/663 (88%), Gaps = 10/663 (2%) Strand=Plus/Plus Query 17 ACGCGATGGGGCGAAGACCTGCGAGATGTTACCGTCAGATTAAGGGAAAGCCATACCCAA 76 |||| ||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 52 ACGCCATGGGAAGAAGACCTGCGAGGTGTTACCGTCAGATCAAGGGTAAGCCATACCCAA 111 Query 77 AATCAAGATACTGTCGTGGTGTTCCCGATCCAAAGATCAGGATTTACGATGTTGGTATGA 136 | || | |||||||||||||| || |||||||| |||||||| |||||||||||||||| Sbjct 112 AGTCTCGCTACTGTCGTGGTGTGCCAGATCCAAAAATCAGGATCTACGATGTTGGTATGA 171 Query 137 AGAGGAAAGGAGTTGATGAG-TTCCCTTACTGTGTTCATTTAGTTTCATGGGAGAAAGAG 195 ||||||| || ||||||||| |||| || |||||| ||||| || ||||||||||| ||| Sbjct 172 AGAGGAAGGGTGTTGATGAGTTTCCATT-CTGTGTCCATTTGGTGTCATGGGAGAAGGAG 230 Query 196 AATGTTTCAAGTGAAGCTCTTGAAGCTGCTCGTATTGCTTGTAACAAGTACATGGTGAAA 255 ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| Sbjct 231 AATGTGTCAAGTGAAGCACTTGAAGCTGCCCGTATTGCTTGCAACAAGTACATGGTGAAG 290 Query 256 TCTGCGGGGAAAGATGCTTTCCATCTCCGTATTAGAGTTCATCCTTTCCATGTTCTTAGG 315 ||||| || ||||||||||| ||| | | ||||| |||||||||||||||||||| ||| Sbjct 291 TCTGCTGGAAAAGATGCTTTTCATTTGAGGATTAGGGTTCATCCTTTCCATGTTCTCAGG 350 Query 316 ATTAATAAGATGCTTTCTTGTGCTGGAGCTGATAGACTTCAGACTGGTATGAGAGGTGCT 375 ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 351 ATTAACAAGATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACTGGTATGAGAGGTGCT 410 Query 376 TTTGGTAAAGCTCTTGG-TACTTGTGCTAGAGTTGCTATCGGACAGGTTCTTTTGTCTGT 434 |||||||||||| |||| |||||||||| | |||||||| |||||||||||||||||||| Sbjct 411 TTTGGTAAAGCT-TTGGGTACTTGTGCTCGTGTTGCTATTGGACAGGTTCTTTTGTCTGT 469 Query 435 GAGATGCAAAGATGCTCATGGACATCATGCTCAGGAGGCTCTTCGTCGTGCTAAGTTTAA 494 | ||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| || Sbjct 470 TCGTTGCAAGGATGCCCATGGTCACCATGCTCAAGAGGCTCTTCGTCGTGCTAAGTTCAA 529 Query 495 GTTCCCTGGTCGTCAAAAGATCATTGTTAGCAGGAAATGGGGATTCACCAAGTTTAACCG 554 ||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||| | Sbjct 530 GTTCCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGCTTCACGAAGTTTAACAG 589 Query 555 TGCTGA-TTACACAAAGCTAAGGCAAGAGAAGCG-GATTGTCCCTGATGGTGTCAACGCC 612 ||||| || ||| ||| | |||||||||||||| | |||||||||||||||||||||| Sbjct 590 AGCTGACTT-CACCAAGTTGAGGCAAGAGAAGCGTG-TTGTCCCTGATGGTGTCAACGCT 647 Query 613 AAGTTCCTATCTTGCCATGGTC-TGTTGGCTAACCGTCAGCCCGGAAGTGCGTTCTTGTC 671 |||||||| || |||||||| | | ||||||||||||||||| |||||||| || ||| | Sbjct 648 AAGTTCCTCTCATGCCATGGACCT-TTGGCTAACCGTCAGCCGGGAAGTGCCTTTTTGCC 706 Query 672 AGC 674 ||| Sbjct 707 AGC 709 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34259688254 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5