BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921544
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26900.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2595 0.0
> AT1G26900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:9319756-9321474 REVERSE LENGTH=1719
Length=1719
Score = 2595 bits (1405), Expect = 0.0
Identities = 1615/1716 (94%), Gaps = 16/1716 (1%)
Strand=Plus/Plus
Query 20 GATGACATCAAGCCTCAGTCGCAATTTTGTGTTCCGACGTAAGAATCTTG-ATGCGTTGT 78
||| || ||| | ||||| |||||||| |||||||| |||| |||||||| || ||||||
Sbjct 12 GATTACGTCACGGCTCAGGCGCAATTTCGTGTTCCGTCGTAGGAATCTTGAAT-CGTTGT 70
Query 79 TATCTCCACAATGCCAGAAACTTGTAGAA-GATTTAAGATCTTGCAGAGACATCTTCGAA 137
| ||||||||||| ||||||||| | || ||| |||| ||||||||||||| | |||||
Sbjct 71 TGTCTCCACAATGTCAGAAACTTAT-CAACGATCTAAGGTCTTGCAGAGACACCGTCGAA 129
Query 138 GTTTCTCGAATTCATGGCTACATGGTGAAAACGGGGA-TTGATAAGGATGATTTCTCAGT 196
||||||||||||||||| |||||||||||||| |||| | || ||||| |||||| ||||
Sbjct 130 GTTTCTCGAATTCATGGTTACATGGTGAAAAC-GGGACTCGACAAGGACGATTTCGCAGT 188
Query 197 GAGCAAGCTTCTTGCTTTTTCCTCTGTACTTGACATTCGATACGCTTCTTCGATCTTCGA 256
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 189 GAGCAAGCTTCTTGCTTTTTCCTCTGTACTTGACATTCGATACGCTTCGTCGATCTTCGA 248
Query 257 GCATGTCTCCAACACTAATCTCTATATGTTCAACACTATGATCAGAGGTTACTCGATTAG 316
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 249 GCATGTCTCCAACACTAATCTCTTTATGTTCAACACTATGATCAGAGGTTACTCGATTAG 308
Query 317 CGATGAGCCGGAGCGAGCA-TTTCGTGTTTTCAACCAATTGAGAGCTAAAGGTATCACCT 375
||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||
Sbjct 309 CGATGAGCCGGAGCGAGCATTTTC-TGTTTTCAACCAATTGAGAGCTAAAGGTTTGACCT 367
Query 376 TGGACCGATTCTCTTTTATCACGACTCTGAAATCATGTTCTCGTGATTTGTGTAG-TTCA 434
||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||||
Sbjct 368 TGGACCGATTCTCGTTTATCACGACTCTTAAATCATGTTCTCGTGAATTGTGT-GTTTCA 426
Query 435 ATTGGTGAGGGATTGCATGGGATTGCTTTGAGATCTGGGTTCATGGTTTTTACTGATTTG 494
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 427 ATTGGTGAGGGATTGCATGGGATTGCTTTGAGATCTGGGTTTATGGTTTTTACTGATTTG 486
Query 495 AGGAATGCTCTTCTACAATTTTACTGTGTTTGTGGAAGGATTAATGATGCTCGGAAAGTG 554
|||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 487 AGGAATGCTCTTATACATTTTTACTGTGTTTGTGGAAAGATTAGTGATGCTCGGAAAGTG 546
Query 555 TTCGACGAAATGCCGCATAGTGTTGATTCTGTTTCGTTTAGTACTTTGATGAATGGGTAT 614
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 547 TTCGACGAAATGCCGCAGAGTGTTGATGCTGTTACGTTTAGTACTTTGATGAATGGGTAT 606
Query 615 CTTCAGGTTACTAAGCAAGCGTTGGCTCTGGATTTGTTTAGGATTATGCGAAATAGTGAA 674
||||||||| ||||| ||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 607 CTTCAGGTTTCTAAGAAAGCGTTGGCTTTGGATTTGTTTAGGATTATGAGAAAAAGTGAG 666
Query 675 GTGCCCGTTAATGTCAGTACGTTGCTTGGCTTTCTTTCGGCTACTGGAGATCTAGGAAAC 734
||| |||||||||||||||||||||| ||||||||||||||| | | ||||||||| |
Sbjct 667 GTGGTCGTTAATGTCAGTACGTTGCTTAGCTTTCTTTCGGCTATTAGTGATCTAGGAGAT 726
Query 735 TTGTCTGGAGCAGAATCTGCTCATGGT-TTATGCATCAAGATTGGTTTTAATTTAGACTT 793
|||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||
Sbjct 727 TTGTCTGGAGCAGAATCTGCTCAT-GTGTTATGCATCAAGATTGGCCTTGATTTAGACTT 785
Query 794 GCATTTAATCACAGCTTTGATTGGGATGTACGGCAAAATTGGGGATATCGGTTCAGCACG 853
||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||||||||
Sbjct 786 GCATTTAATCACAGCTTTGATAGGGATGTACGGCAAAACTGGGGGTATCAGTTCAGCACG 845
Query 854 CAGGATCTTTGATTGCGCCATTCGAAAGGATGTTGTTACATGGAACTGTATGATTGACCA 913
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 846 CAGGATCTTTGATTGCGCCATTCGAAAGGATGTTGTTACATGGAACTGTATGATAGACCA 905
Query 914 ATATGCCAAAATGGGTCTCCTTGAAGAGAGTTTATGGCTACTGAGGCAGATGAAGTATGA 973
||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 906 ATATGCCAAAACGGGTCTCCTTGAAGAGTGTGTATGGCTACTGAGGCAGATGAAGTATGA 965
Query 974 AAGAATGAAACCGAATTCATCTACATTTGTTGGGCTGTTGTCTTCCTGTGCGAACAGTGA 1033
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 966 AAAAATGAAACCGAATTCATCTACATTTGTTGGGCTGTTGTCTTCCTGTGCGTACAGTGA 1025
Query 1034 AGCAGCATTCGTAGGACGTAGTGTTGCTGATCTAGTGGAAGAGGAAAGAATAGCTTTGGA 1093
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1026 AGCAGCATTCGTAGGACGTACTGTTGCTGATCTATTGGAAGAGGAAAGAATAGCTTTGGA 1085
Query 1094 TGCAATACTTGGAACTGCACTCGTTGATATGTATGCAAAACTAGGAATGCTTGACAAAGC 1153
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||
Sbjct 1086 TGCAATACTTGGAACTGCACTCGTTGATATGTATGCAAAAGTAGGATTGCTTGAAAAAGC 1145
Query 1154 TGTTGAAATATTT-AATAGAATGAAGGATAAGGATGTTATGTCCTGGACCGCAATGATCT 1212
|||||| || ||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 1146 TGTTGAGAT-TTTCAATAGAATGAAGGATAAGGATGTAAAGTCCTGGACCGCGATGATCT 1204
Query 1213 CGGGTTATGGAGCTCATGGACTAGCAAGAGAAGCAGTAACACTGTTCAATAAGATGGAGG 1272
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1205 CGGGTTATGGAGCTCATGGACTAGCAAGAGAAGCAGTAACACTATTCAATAAGATGGAGG 1264
Query 1273 AAGAGAACTGCAAGGTGAGACCCAATGAGATTACCTTCTTGGTTGTGCTGAATGCTTGTA 1332
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 AAGAGAACTGCAAAGTGAGACCCAATGAGATTACCTTCTTGGTTGTGCTGAATGCTTGTA 1324
Query 1333 GTCATGGAGGGTTGGTAATGGAAGGAATCAGATGCTTTAAGAGGATGGTTGAGGCTTACA 1392
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 GCCATGGAGGGTTGGTAATGGAAGGAATCAGATGCTTTAAGAGGATGGTTGAGGCTTACA 1384
Query 1393 GCTTCACGCCCAAAGTTGAACATTATGGTTGTGTGGTTGATCTTTTAGGTCGAGCGGGGC 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GCTTCACGCCCAAAGTTGAACATTATGGTTGTGTGGTTGATCTTTTAGGTCGAGCGGGGC 1444
Query 1453 AGTTAGAGGAAGCGTATGAGTTAATAAGGAACTTACCTATCACAAGTGATTCATCGGCTT 1512
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1445 AGTTAGAGGAAGCGTATGAGTTAATAAGGAACTTACCGATCACAAGTGATTCAACGGCTT 1504
Query 1513 GGCGTGCTCTGCTAGCTGCTTGTAGAGTATACGGGAATGCAGATTTGGGGGAAAGTGTGA 1572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 GGCGTGCTCTGCTAGCTGCTTGTAGAGTATACGGGAATGCAGATTTGGGGGAAAGTGTGA 1564
Query 1573 TGATGAGATTGGCTGAAATGGATGAGA-TACATCCAGCTGATGCAATTCTTCTTGCTGGG 1631
||||||||||||||||||||| ||||| | ||||| || |||||||||||||| ||||||
Sbjct 1565 TGATGAGATTGGCTGAAATGGGTGAGACT-CATCCGGCAGATGCAATTCTTCTAGCTGGG 1623
Query 1632 ACACACGCTGTTGCAGGGAATCCACAAAAATCATTAGATGATGAGTTGAATAAAGCGAGA 1691
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||| ||||
Sbjct 1624 ACACACGCTGTTGCAGGGAACCCAGAAAAATCATTAGATAATGAGTTGAATAAAGGGAGA 1683
Query 1692 AAAGAAGCTGGATACAGCGCCATTGAAATAGAATAG 1727
||||||||||||||||||||||||||||||||||||
Sbjct 1684 AAAGAAGCTGGATACAGCGCCATTGAAATAGAATAG 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86445338490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5