BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921548
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69640.1 | Symbols: SBH1 | sphingoid base hydroxylase 1 | ch... 545 2e-154
> AT1G69640.1 | Symbols: SBH1 | sphingoid base hydroxylase 1 |
chr1:26193659-26195695 REVERSE LENGTH=1286
Length=1286
Score = 545 bits (295), Expect = 2e-154
Identities = 480/567 (85%), Gaps = 22/567 (4%)
Strand=Plus/Plus
Query 275 GGTGACAGGAAGTGATGCCG-AGTCCAGCACACA--GC-A-A-TCTTCCATATTGGTTCT 328
|||||| ||||||||||||| || ||| ||| | || | | | |||| | ||||| ||
Sbjct 457 GGTGACGGGAAGTGATGCCGAAG--CAG-ACAAAGCGCAACAGTTTTCCTTCTTGGTCCT 513
Query 329 AGCTGGTCAGTGTGTAATTGCCATGTTAGTCCTCGACACATGGCAATACTTCATGCATCG 388
||| | |||| ||| | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 514 AGCAAGACAGTTTGTGACTGCCATGATAGTCCTCGACACATGGCAATACTTCATGCATCG 573
Query 389 GTATATGCATCACAACAAGTTCTTATACAAACATATCCACTCTCAGCACCATAGGCTTGT 448
||||||||||| |||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 574 ATATATGCATCAGAACAAGTTCTTATACAAACATATCCACTCTCAACACCACCGTCTTAT 633
Query 449 TGTTCCCT-ATGCTTATGGAGCTCTATACAACCATCCAATAGAAGGCCTTCTCCTCGATA 507
|| |||| |||| ||||||||| |||||||||||||| | ||||| |||||| | ||||
Sbjct 634 CGT-CCCTTATGCATATGGAGCTTTATACAACCATCCAGTGGAAGGTCTTCTCTTGGATA 692
Query 508 CAATTGGTGGCGCCTTATCTTTTCTCA-TCTCGGGTATGTCTCCAAGAACTTCAATCTTC 566
||||||| |||||||||||||| || | |||| |||||||||||||||||||| ||||||
Sbjct 693 CAATTGGAGGCGCCTTATCTTTCCT-AGTCTCTGGTATGTCTCCAAGAACTTCCATCTTC 751
Query 567 TTCTTCTCCTTT-GCAACCATCAAAACCGTGGATGACCATTGCGGACTCTGCCTCCCCGG 625
|||||||| ||| || || |||||||||||||| ||||||||||| ||||| || || ||
Sbjct 752 TTCTTCTC-TTTCGCCACGATCAAAACCGTGGACGACCATTGCGGTCTCTGGCTACCTGG 810
Query 626 AAATCTC-TTCCATATCTTGTTTAAGAACAACACCGCGTATCATGATGTGCACCATCAGC 684
||| || |||||||| | || ||||||||| | || || || ||| | || |||||||
Sbjct 811 AAA-CTTATTCCATATGGTCTTCAAGAACAACTCGGCTTACCACGATATCCATCATCAGC 869
Query 685 TTTATGGAAACAAATTCAACTTCTCTCAGCCTTTCTTCGTCATGTGGGATCGGATTCTTG 744
| ||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 870 TCTATGGAACCAAATACAATTTCTCTCAGCCTTTCTTTGTCATGTGGGATCGGATTCTTG 929
Query 745 GTACTTACATGCCTTACTCGCTTGAGAAACG-GAAAGATGGCGGATTTGAAGCTCGTCCA 803
| ||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||| ||
Sbjct 930 GAACTTACATGCCTTACTCGCTTGAGAAAAGAGAA-GATGGAGGATTCGAAGCTCGCCCG 988
Query 804 ACGAAACAAGTT-AAAGACTGATTAAG 829
|| ||| || || |||||| |||||||
Sbjct 989 ACTAAAGAA-TTCAAAGAC-GATTAAG 1013
Score = 213 bits (115), Expect = 2e-54
Identities = 190/226 (84%), Gaps = 6/226 (3%)
Strand=Plus/Plus
Query 23 GATGGGTTTTGTTCTGTCTGACGAATTGTTGGG-AGCTTTTGCTCCGATTCTGGTGTATT 81
||||||||||| | | || || ||||||||||| | || ||||||||||| ||||||| |
Sbjct 235 GATGGGTTTTGCTGTATCGGATGAATTGTTGGGTA-CTGTTGCTCCGATTGTGGTGTACT 293
Query 82 GGGTT-TATTCTGGGGTTTATGT-GGGACTCTCTTCGTTGGAGAGTTATAGATTGCATTC 139
|||| ||||||||| ||||||| | | ||||| || || ||||||||||||||||||||
Sbjct 294 -GGTTGTATTCTGGGATTTATGTAGCG-CTCTCCTCTTTAGAGAGTTATAGATTGCATTC 351
Query 140 AAAGGTTGAGGAAGAAGAGAAGAATCTTGTCTCCAAGTCAAATGTTGTTAAAGGTGTTCT 199
||||||||| |||||||||||||||||||| || || || |||||| |||||||||||
Sbjct 352 AAAGGTTGAAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCT 411
Query 200 TCTCCAACAGCTTATTCAGGCCATCGTCGCTATCCTTCTGTTCACG 245
| | |||||| || |||| || | |||||||||||| ||||||||
Sbjct 412 TGTTCAACAGGTTGTTCAAGCTGTTGTCGCTATCCTTTTGTTCACG 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41292468834
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5