BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921553 Length=2066 Score E Sequences producing significant alignments: (Bits) Value AT1G21160.1 | Symbols: | eukaryotic translation initiation fac... 856 0.0 AT1G76810.1 | Symbols: | eukaryotic translation initiation fac... 433 4e-120 AT1G76720.1 | Symbols: | eukaryotic translation initiation fac... 388 9e-107 > AT1G21160.1 | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:7407955-7412857 REVERSE LENGTH=3724 Length=3724 Score = 856 bits (463), Expect = 0.0 Identities = 622/695 (89%), Gaps = 26/695 (4%) Strand=Plus/Plus Query 865 AGGTGGATACGATATGTGGGTGGGaaaaaaaGCAAGAATGCTCCTCTATTGAAGACAATG 924 ||||||||| | ||| |||||||| |||||||||||||||||||| || |||||||||| Sbjct 2141 AGGTGGATAGGCTATATGGGTGGG-AAAAAAGCAAGAATGCTCCTATAAGGAAGACAATG 2199 Query 925 AAGCAACAATCGAGAGATGTGGTTAATGAATTTAACATGAGAG-TAGATC-ATGTT-AAA 981 | ||||||| || ||||||||||||| |||||||| ||||| | || | | | ||| ||| Sbjct 2200 ATGCAACAAACGGGAGATGTGGTTAAGGAATTTAAAATGAG-GCTAAACCGA-GTTCAAA 2257 Query 982 ACCCAGTTCCAAGAACAAGGAATCAATTGTATGCTTTATTACAAGAACAAAGAAATGGAA 1041 | ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| | Sbjct 2258 A-CCAGTTCCAAGAACAAGGACTCAACAGTATGCTTTATTACAAGAACAGAGAAATGGGA 2316 Query 1042 GAAACTAT-ATGTATTGTACCTACTAGCGCTATTAGGTCTCAGAttttttttGGGGAAGG 1100 |||||||| | |||| ||||| ||||||| || | | || ||||||||| Sbjct 2317 GAAACTATCA-GTATCCTACCTGCTAGCGC---TA--T-T-AG--------TGGGGAAGG 2360 Query 1101 GATCCCAGATCCTTTGA-TGTTGTTGGTTCTATGGGCTCAGAAAACAATGGTGGAGAAAC 1159 ||| |||||| |||| | |||| ||||||| ||||||||||||||| ||||||||||||| Sbjct 2361 GATTCCAGAT-CTTTTACTGTTCTTGGTTCAATGGGCTCAGAAAACGATGGTGGAGAAAC 2419 Query 1160 TCACATATGTTGATAAAGTGCAGTGTACTGTCCTTGAGGTCAAAGTTATTGAAAGCCATG 1219 | ||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 2420 TTACATATGTTGACAAAGTGCAGTGTACCGTCCTTGAGGTCAAAGTTATTGAAGGCCATG 2479 Query 1220 GTATTACTGTTGATGTTGTTTTGCTCAACGGTGTACTCCGTGAAGCTGATCAAATCGTTG 1279 ||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| |||| Sbjct 2480 GTATTACAGTTGATGTTGTTTTGGTCAACGGTGTACTCCGTGAAGGTGATCAAATTGTTG 2539 Query 1280 TTTGTGGGTCACAGGGACCAATTGTAACAACTATTAGATCATTATTGACTCCTTATCCTA 1339 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 2540 TTTGTGGGTCACAGGGACCAATTGTAACAACTATTAGATCATTGTTGACTCCTTATCCTA 2599 Query 1340 TGAACGAGACGCGGGTGAAGGGTACCTATATGGCACACAGGGAAGTAAAGGCTGCACAGG 1399 ||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||| |||| Sbjct 2600 TGAACGAGATGCGGGTGACGGGTACCTATATGCCTCACAGAGAAGTAAAGGCTGCGCAGG 2659 Query 1400 GTATCAAAATTGCAGCACCGGGCCTTGAACACGCTATTGCTGGTACTACCTTGCATGTGA 1459 ||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||||| Sbjct 2660 GTATCAAAATTGCTGCACAGGGCCTTGAACACGCCATTGCTGGTACTGCCTTGCATGTGA 2719 Query 1460 TTGGACCTAATGAGGACATGGAAGAAGCCAAGAAAAATGCCATGGAAGATATTGAATCAG 1519 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2720 TTGGACCTAATGAGGACATGGAAGAAGCCAAGAAAAATGCCATGGAAGATATTGAGTCAG 2779 Query 1520 TTATGAACCGCATTGACAAAAGTGGTGAAGGAGTT 1554 ||||||||||||||||||||||||||||||| ||| Sbjct 2780 TTATGAACCGCATTGACAAAAGTGGTGAAGGCGTT 2814 Score = 619 bits (335), Expect = 3e-176 Identities = 383/407 (94%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 380 TTGCTAAAGAAGTAGAAGAAAATCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTG 439 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1739 TTGCTAAAGAAGTAGAAGAAAATCTTCGCTCTCCAATTTGCTGCATCATGGGTCATGTTG 1798 Query 440 ATTCTGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAG 499 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1799 ATTCTGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAG 1858 Query 500 CTGGAGTTATTACTCAACAGATTAGTGCAACATATTTCCCTGCAGAAAACATCCGTGAGA 559 |||||| |||||||||||||||| ||||||| | |||||||||||||||||||||||||| Sbjct 1859 CTGGAGGTATTACTCAACAGATTGGTGCAACCTTTTTCCCTGCAGAAAACATCCGTGAGA 1918 Query 560 GGACCAAGGAGTTACGTGCTGGTGCTAAACTCAAGTTGTCAGGTCTATTGGTTATCGATA 619 ||||||| ||||||| ||| ||||||||||||| || ||||| ||||||||||||||| Sbjct 1919 GGACCAAAGAGTTACAAGCTAATGCTAAACTCAAGGTGCCAGGTATATTGGTTATCGATA 1978 Query 620 CACCTGGACACGAGTCATTCACAAATCTGTGGTCAAGGGGTTCAAATTTGTGTGACTTTT 679 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1979 CACCTGGACACGAGTCATTCACAAATCTGCGGTCAAGGGGTTCAAATTTGTGTGACCTTG 2038 Query 680 CAATTCCAGTGGTTGACATAATGTGTGGTCTAGAGCCACAAACCTTAGAATCTCTGAATC 739 |||||| ||||||||| |||||| | |||||||||||||||||| |||||||||| |||| Sbjct 2039 CAATTCTAGTGGTTGATATAATGCGAGGTCTAGAGCCACAAACCATAGAATCTCTTAATC 2098 Query 740 TTTTGAGAAGAAGGAATGTAAAGTTCGTTGTTGCCTTGAATAAGGTG 786 |||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 2099 TTTTGAGAAGAAGGAATGTAAAGTTCATTATTGCCTTGAATAAGGTG 2145 Score = 158 bits (85), Expect = 3e-37 Identities = 108/119 (91%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 113 AAGACAATGCATCAAAGTCGCATGATTCAGTTCCTGGCGCAGATAGACCAACAGTGAAGC 172 |||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 1565 AAGACACTGCATCAAAGGCACATGATTCAGTTCCTGGCGCAGATAGACCAACAGTGAAGC 1624 Query 173 CTGGAG-TTGCTGGCAAGCCAAAAACAAATGTCATAAAAGCTATGCCTCGGGTGGATGA 230 |||||| || ||||||||||||||||| || || ||||||||||||| ||||||||| Sbjct 1625 CTGGAGGTT-CTGGCAAGCCAAAAACAGCTGCCAAAAAAGCTATGCCTAAGGTGGATGA 1682 Score = 152 bits (82), Expect = 1e-35 Identities = 107/119 (90%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 254 AAGATAATGCATCAAAGTCGCATGATTCAGTTCCTGGTGCAGATAGACCAACAGTGAAGC 313 |||| | |||||||||| | ||||||||||||||||| |||||||||||||||||||||| Sbjct 1565 AAGACACTGCATCAAAGGCACATGATTCAGTTCCTGGCGCAGATAGACCAACAGTGAAGC 1624 Query 314 CTGGAG-TTGTTGGCAAGCCAAAAACAGATGTCATAAAAGCTATGCCTCAGGTGGATGA 371 |||||| || | |||||||||||||||| || || ||||||||||||| |||||||||| Sbjct 1625 CTGGAGGTTCT-GGCAAGCCAAAAACAGCTGCCAAAAAAGCTATGCCTAAGGTGGATGA 1682 > AT1G76810.1 | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28831003-28836586 REVERSE LENGTH=4395 Length=4395 Score = 433 bits (234), Expect = 4e-120 Identities = 343/396 (87%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 394 GAAGAAAATCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTGATTCTGGTAAAACA 453 ||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||| Sbjct 2245 GAAGAAAATCTCCGCTCTCCCATTTGCTGCATCATGGGTCATGTCGATACTGGTAAGACA 2304 Query 454 AAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAGCTGGAGTTATTACT 513 |||||||||||||||||||||||||||||||| |||||||| || ||||||| ||||||| Sbjct 2305 AAGCTGTTGGATTGCATCAGAGGAACAAATGTACAGGAAGGCGAGGCTGGAGGTATTACT 2364 Query 514 CAACAGATTAGTGCAACATATTTCCCTGCAGAAAACATCCGTGAGAGGACCAAGGAGTT- 572 || |||||| |||||||||||||||| || ||||||||||| |||||||||||||| | Sbjct 2365 CAGCAGATTGGTGCAACATATTTCCCAGCTGAAAACATCCGAGAGAGGACCAAGGAACTG 2424 Query 573 ACGTGCTGGTGCTAAACTCAAGTTGTCAGGTCTATTGGTTATCGATACACCTGGACACGA 632 | || | ||| ||||||||| || ||||| |||| ||||| ||||||||||| ||||| Sbjct 2425 AAA-GCCGATGCAAAACTCAAGGTGCCAGGTTTATTAGTTATTGATACACCTGGCCACGA 2483 Query 633 GTCATTCACAAATCTGTGGTCAAGGGGTTCAAATTTGTGTGACTTTTCAATTCCAGTGGT 692 ||| ||||| |||||| ||||||| ||||||| |||||||||| || ||||| ||||| Sbjct 2484 GTCCTTCACGAATCTGCGGTCAAGAGGTTCAAGTTTGTGTGACCTTGCAATTTTGGTGGT 2543 Query 693 TGACATAATGTGTGG-TCTAGAGCCACAAACCTTAGAATCTCTGAATCTTTTGAGAA-GA 750 ||||||||| ||| | |||||||||||||| |||||||||| ||||||||||| | || Sbjct 2544 GGACATAATGCATGGGT-TAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGA 2602 Query 751 AGGAATGTAAAGTTCGTTGTTGCCTTGAATAAGGTG 786 ||||| | ||||| ||||||| |||||||||||| Sbjct 2603 -GGAATACAGAGTTCATTGTTGCATTGAATAAGGTG 2637 > AT1G76720.1 | Symbols: | eukaryotic translation initiation factor 2 (eIF-2) family protein | chr1:28794144-28800369 REVERSE LENGTH=4156 Length=4156 Score = 388 bits (210), Expect = 9e-107 Identities = 344/408 (84%), Gaps = 12/408 (3%) Strand=Plus/Plus Query 385 AAAGAA-GTAGAAGAAAATCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTGATTC 443 |||||| || | ||||||||| || ||| |||||||| |||||||||||||| ||| Sbjct 2438 AAAGAAGGT-GGAGAAAATCTCCGTTCTATTATTTGCTGTATCATGGGTCATGTCGATAG 2496 Query 444 TGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAGCTGG 503 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2497 TGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTACAGGAAGGTGAGGCTGG 2556 Query 504 AGTTATTACTCAACAGATTAGTGCAACATATTTCCCTGC-AGAAAACATCCGTGAGAGGA 562 || ||| ||||| |||||| ||||||||||||||||||| | |||||||||| ||||||| Sbjct 2557 AGGTATAACTCAGCAGATTGGTGCAACATATTTCCCTGCCA-AAAACATCCGAGAGAGGA 2615 Query 563 CCAAGGAGTT-ACGTGCTGG-TGCTAAACTCAAGTTGTCAGGTCTATTGGTTATCGATAC 620 ||| ||| | | || || ||| ||||| ||| || |||||||||||||||||||||| Sbjct 2616 CCAGGGAACTGAAA-GC-GGATGCAAAACTTAAGGTGCCAGGTCTATTGGTTATCGATAC 2673 Query 621 ACCTGGACACGAGTCATTCACAAATCTGTGGTCAAGGGGTTCAAATTTGTGTGACTTTTC 680 |||||| || ||||| || || |||||| ||||||| ||||||| |||||| ||| || | Sbjct 2674 ACCTGGCCATGAGTCCTTTACTAATCTGCGGTCAAGAGGTTCAAGTTTGTGCGACCTTGC 2733 Query 681 AATTCCAGTGGTTGACATAATGTGTGG-TCTAGAGCCACAAACCTTAGAATCTCTGAATC 739 |||| ||||||||||||| | ||| | |||||||||||||| |||||||||| |||| Sbjct 2734 AATTTTGGTGGTTGACATAAAGCATGGGT-TAGAGCCACAAACCATAGAATCTCTAAATC 2792 Query 740 TTTTGAGAA-GAAGGAATGTAAAGTTCGTTGTTGCCTTGAATAAGGTG 786 ||||||| | || ||||| | ||||| || |||| |||||||||||| Sbjct 2793 TTTTGAGGATGA-GGAATACAGAGTTCATTATTGCATTGAATAAGGTG 2839 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 102409111800 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5