BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921553
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21160.1 | Symbols: | eukaryotic translation initiation fac... 856 0.0
AT1G76810.1 | Symbols: | eukaryotic translation initiation fac... 433 4e-120
AT1G76720.1 | Symbols: | eukaryotic translation initiation fac... 388 9e-107
> AT1G21160.1 | Symbols: | eukaryotic translation initiation factor
2 (eIF-2) family protein | chr1:7407955-7412857 REVERSE
LENGTH=3724
Length=3724
Score = 856 bits (463), Expect = 0.0
Identities = 622/695 (89%), Gaps = 26/695 (4%)
Strand=Plus/Plus
Query 865 AGGTGGATACGATATGTGGGTGGGaaaaaaaGCAAGAATGCTCCTCTATTGAAGACAATG 924
||||||||| | ||| |||||||| |||||||||||||||||||| || ||||||||||
Sbjct 2141 AGGTGGATAGGCTATATGGGTGGG-AAAAAAGCAAGAATGCTCCTATAAGGAAGACAATG 2199
Query 925 AAGCAACAATCGAGAGATGTGGTTAATGAATTTAACATGAGAG-TAGATC-ATGTT-AAA 981
| ||||||| || ||||||||||||| |||||||| ||||| | || | | | ||| |||
Sbjct 2200 ATGCAACAAACGGGAGATGTGGTTAAGGAATTTAAAATGAG-GCTAAACCGA-GTTCAAA 2257
Query 982 ACCCAGTTCCAAGAACAAGGAATCAATTGTATGCTTTATTACAAGAACAAAGAAATGGAA 1041
| ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||| |
Sbjct 2258 A-CCAGTTCCAAGAACAAGGACTCAACAGTATGCTTTATTACAAGAACAGAGAAATGGGA 2316
Query 1042 GAAACTAT-ATGTATTGTACCTACTAGCGCTATTAGGTCTCAGAttttttttGGGGAAGG 1100
|||||||| | |||| ||||| ||||||| || | | || |||||||||
Sbjct 2317 GAAACTATCA-GTATCCTACCTGCTAGCGC---TA--T-T-AG--------TGGGGAAGG 2360
Query 1101 GATCCCAGATCCTTTGA-TGTTGTTGGTTCTATGGGCTCAGAAAACAATGGTGGAGAAAC 1159
||| |||||| |||| | |||| ||||||| ||||||||||||||| |||||||||||||
Sbjct 2361 GATTCCAGAT-CTTTTACTGTTCTTGGTTCAATGGGCTCAGAAAACGATGGTGGAGAAAC 2419
Query 1160 TCACATATGTTGATAAAGTGCAGTGTACTGTCCTTGAGGTCAAAGTTATTGAAAGCCATG 1219
| ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 2420 TTACATATGTTGACAAAGTGCAGTGTACCGTCCTTGAGGTCAAAGTTATTGAAGGCCATG 2479
Query 1220 GTATTACTGTTGATGTTGTTTTGCTCAACGGTGTACTCCGTGAAGCTGATCAAATCGTTG 1279
||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| ||||
Sbjct 2480 GTATTACAGTTGATGTTGTTTTGGTCAACGGTGTACTCCGTGAAGGTGATCAAATTGTTG 2539
Query 1280 TTTGTGGGTCACAGGGACCAATTGTAACAACTATTAGATCATTATTGACTCCTTATCCTA 1339
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2540 TTTGTGGGTCACAGGGACCAATTGTAACAACTATTAGATCATTGTTGACTCCTTATCCTA 2599
Query 1340 TGAACGAGACGCGGGTGAAGGGTACCTATATGGCACACAGGGAAGTAAAGGCTGCACAGG 1399
||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||| ||||
Sbjct 2600 TGAACGAGATGCGGGTGACGGGTACCTATATGCCTCACAGAGAAGTAAAGGCTGCGCAGG 2659
Query 1400 GTATCAAAATTGCAGCACCGGGCCTTGAACACGCTATTGCTGGTACTACCTTGCATGTGA 1459
||||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||
Sbjct 2660 GTATCAAAATTGCTGCACAGGGCCTTGAACACGCCATTGCTGGTACTGCCTTGCATGTGA 2719
Query 1460 TTGGACCTAATGAGGACATGGAAGAAGCCAAGAAAAATGCCATGGAAGATATTGAATCAG 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2720 TTGGACCTAATGAGGACATGGAAGAAGCCAAGAAAAATGCCATGGAAGATATTGAGTCAG 2779
Query 1520 TTATGAACCGCATTGACAAAAGTGGTGAAGGAGTT 1554
||||||||||||||||||||||||||||||| |||
Sbjct 2780 TTATGAACCGCATTGACAAAAGTGGTGAAGGCGTT 2814
Score = 619 bits (335), Expect = 3e-176
Identities = 383/407 (94%), Gaps = 0/407 (0%)
Strand=Plus/Plus
Query 380 TTGCTAAAGAAGTAGAAGAAAATCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTG 439
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1739 TTGCTAAAGAAGTAGAAGAAAATCTTCGCTCTCCAATTTGCTGCATCATGGGTCATGTTG 1798
Query 440 ATTCTGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATTCTGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAG 1858
Query 500 CTGGAGTTATTACTCAACAGATTAGTGCAACATATTTCCCTGCAGAAAACATCCGTGAGA 559
|||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1859 CTGGAGGTATTACTCAACAGATTGGTGCAACCTTTTTCCCTGCAGAAAACATCCGTGAGA 1918
Query 560 GGACCAAGGAGTTACGTGCTGGTGCTAAACTCAAGTTGTCAGGTCTATTGGTTATCGATA 619
||||||| ||||||| ||| ||||||||||||| || ||||| |||||||||||||||
Sbjct 1919 GGACCAAAGAGTTACAAGCTAATGCTAAACTCAAGGTGCCAGGTATATTGGTTATCGATA 1978
Query 620 CACCTGGACACGAGTCATTCACAAATCTGTGGTCAAGGGGTTCAAATTTGTGTGACTTTT 679
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1979 CACCTGGACACGAGTCATTCACAAATCTGCGGTCAAGGGGTTCAAATTTGTGTGACCTTG 2038
Query 680 CAATTCCAGTGGTTGACATAATGTGTGGTCTAGAGCCACAAACCTTAGAATCTCTGAATC 739
|||||| ||||||||| |||||| | |||||||||||||||||| |||||||||| ||||
Sbjct 2039 CAATTCTAGTGGTTGATATAATGCGAGGTCTAGAGCCACAAACCATAGAATCTCTTAATC 2098
Query 740 TTTTGAGAAGAAGGAATGTAAAGTTCGTTGTTGCCTTGAATAAGGTG 786
|||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 2099 TTTTGAGAAGAAGGAATGTAAAGTTCATTATTGCCTTGAATAAGGTG 2145
Score = 158 bits (85), Expect = 3e-37
Identities = 108/119 (91%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 113 AAGACAATGCATCAAAGTCGCATGATTCAGTTCCTGGCGCAGATAGACCAACAGTGAAGC 172
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 AAGACACTGCATCAAAGGCACATGATTCAGTTCCTGGCGCAGATAGACCAACAGTGAAGC 1624
Query 173 CTGGAG-TTGCTGGCAAGCCAAAAACAAATGTCATAAAAGCTATGCCTCGGGTGGATGA 230
|||||| || ||||||||||||||||| || || ||||||||||||| |||||||||
Sbjct 1625 CTGGAGGTT-CTGGCAAGCCAAAAACAGCTGCCAAAAAAGCTATGCCTAAGGTGGATGA 1682
Score = 152 bits (82), Expect = 1e-35
Identities = 107/119 (90%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 254 AAGATAATGCATCAAAGTCGCATGATTCAGTTCCTGGTGCAGATAGACCAACAGTGAAGC 313
|||| | |||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1565 AAGACACTGCATCAAAGGCACATGATTCAGTTCCTGGCGCAGATAGACCAACAGTGAAGC 1624
Query 314 CTGGAG-TTGTTGGCAAGCCAAAAACAGATGTCATAAAAGCTATGCCTCAGGTGGATGA 371
|||||| || | |||||||||||||||| || || ||||||||||||| ||||||||||
Sbjct 1625 CTGGAGGTTCT-GGCAAGCCAAAAACAGCTGCCAAAAAAGCTATGCCTAAGGTGGATGA 1682
> AT1G76810.1 | Symbols: | eukaryotic translation initiation factor
2 (eIF-2) family protein | chr1:28831003-28836586 REVERSE
LENGTH=4395
Length=4395
Score = 433 bits (234), Expect = 4e-120
Identities = 343/396 (87%), Gaps = 6/396 (2%)
Strand=Plus/Plus
Query 394 GAAGAAAATCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTGATTCTGGTAAAACA 453
||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 2245 GAAGAAAATCTCCGCTCTCCCATTTGCTGCATCATGGGTCATGTCGATACTGGTAAGACA 2304
Query 454 AAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAGCTGGAGTTATTACT 513
|||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||
Sbjct 2305 AAGCTGTTGGATTGCATCAGAGGAACAAATGTACAGGAAGGCGAGGCTGGAGGTATTACT 2364
Query 514 CAACAGATTAGTGCAACATATTTCCCTGCAGAAAACATCCGTGAGAGGACCAAGGAGTT- 572
|| |||||| |||||||||||||||| || ||||||||||| |||||||||||||| |
Sbjct 2365 CAGCAGATTGGTGCAACATATTTCCCAGCTGAAAACATCCGAGAGAGGACCAAGGAACTG 2424
Query 573 ACGTGCTGGTGCTAAACTCAAGTTGTCAGGTCTATTGGTTATCGATACACCTGGACACGA 632
| || | ||| ||||||||| || ||||| |||| ||||| ||||||||||| |||||
Sbjct 2425 AAA-GCCGATGCAAAACTCAAGGTGCCAGGTTTATTAGTTATTGATACACCTGGCCACGA 2483
Query 633 GTCATTCACAAATCTGTGGTCAAGGGGTTCAAATTTGTGTGACTTTTCAATTCCAGTGGT 692
||| ||||| |||||| ||||||| ||||||| |||||||||| || ||||| |||||
Sbjct 2484 GTCCTTCACGAATCTGCGGTCAAGAGGTTCAAGTTTGTGTGACCTTGCAATTTTGGTGGT 2543
Query 693 TGACATAATGTGTGG-TCTAGAGCCACAAACCTTAGAATCTCTGAATCTTTTGAGAA-GA 750
||||||||| ||| | |||||||||||||| |||||||||| ||||||||||| | ||
Sbjct 2544 GGACATAATGCATGGGT-TAGAGCCACAAACCATAGAATCTCTAAATCTTTTGAGGATGA 2602
Query 751 AGGAATGTAAAGTTCGTTGTTGCCTTGAATAAGGTG 786
||||| | ||||| ||||||| ||||||||||||
Sbjct 2603 -GGAATACAGAGTTCATTGTTGCATTGAATAAGGTG 2637
> AT1G76720.1 | Symbols: | eukaryotic translation initiation factor
2 (eIF-2) family protein | chr1:28794144-28800369 REVERSE
LENGTH=4156
Length=4156
Score = 388 bits (210), Expect = 9e-107
Identities = 344/408 (84%), Gaps = 12/408 (3%)
Strand=Plus/Plus
Query 385 AAAGAA-GTAGAAGAAAATCTTCGCTCTCCCATTTGCTGCATCATGGGTCATGTTGATTC 443
|||||| || | ||||||||| || ||| |||||||| |||||||||||||| |||
Sbjct 2438 AAAGAAGGT-GGAGAAAATCTCCGTTCTATTATTTGCTGTATCATGGGTCATGTCGATAG 2496
Query 444 TGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTTCAGGAAGGTGAAGCTGG 503
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2497 TGGTAAAACAAAGCTGTTGGATTGCATCAGAGGAACAAATGTACAGGAAGGTGAGGCTGG 2556
Query 504 AGTTATTACTCAACAGATTAGTGCAACATATTTCCCTGC-AGAAAACATCCGTGAGAGGA 562
|| ||| ||||| |||||| ||||||||||||||||||| | |||||||||| |||||||
Sbjct 2557 AGGTATAACTCAGCAGATTGGTGCAACATATTTCCCTGCCA-AAAACATCCGAGAGAGGA 2615
Query 563 CCAAGGAGTT-ACGTGCTGG-TGCTAAACTCAAGTTGTCAGGTCTATTGGTTATCGATAC 620
||| ||| | | || || ||| ||||| ||| || ||||||||||||||||||||||
Sbjct 2616 CCAGGGAACTGAAA-GC-GGATGCAAAACTTAAGGTGCCAGGTCTATTGGTTATCGATAC 2673
Query 621 ACCTGGACACGAGTCATTCACAAATCTGTGGTCAAGGGGTTCAAATTTGTGTGACTTTTC 680
|||||| || ||||| || || |||||| ||||||| ||||||| |||||| ||| || |
Sbjct 2674 ACCTGGCCATGAGTCCTTTACTAATCTGCGGTCAAGAGGTTCAAGTTTGTGCGACCTTGC 2733
Query 681 AATTCCAGTGGTTGACATAATGTGTGG-TCTAGAGCCACAAACCTTAGAATCTCTGAATC 739
|||| ||||||||||||| | ||| | |||||||||||||| |||||||||| ||||
Sbjct 2734 AATTTTGGTGGTTGACATAAAGCATGGGT-TAGAGCCACAAACCATAGAATCTCTAAATC 2792
Query 740 TTTTGAGAA-GAAGGAATGTAAAGTTCGTTGTTGCCTTGAATAAGGTG 786
||||||| | || ||||| | ||||| || |||| ||||||||||||
Sbjct 2793 TTTTGAGGATGA-GGAATACAGAGTTCATTATTGCATTGAATAAGGTG 2839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102409111800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5