BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921555 Length=1316 Score E Sequences producing significant alignments: (Bits) Value AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 809 0.0 AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 710 0.0 > AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr1:7744189-7747785 FORWARD LENGTH=2504 Length=2504 Score = 809 bits (438), Expect = 0.0 Identities = 537/585 (92%), Gaps = 6/585 (1%) Strand=Plus/Plus Query 2 ATGGCGTTATGTCTGGAC-GATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60 |||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||| Sbjct 180 ATGGCGTTATGTCTGG-CTGATGCTGCCTAAACTCGAGTTCAAAGACGAAGGCAGCGAGA 238 Query 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120 ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| Sbjct 239 GCGTTGGGTGGTTTATTAAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATTGTT 298 Query 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180 ||||||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| Sbjct 299 TGATTGTCGAACTCGGTCCACATTGTCCTATTGACGTCGATGTCAGAAAGTGGGTTGAGA 358 Query 181 ACGCAGTTAATAGAGATGTTGAAGATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCCA 240 |||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||| | Sbjct 359 ACGCAGTTAATAGAGATGTTAAAGATTTAGATTTCACGCTCCTCTGGAGCGCAGCGCCTA 418 Query 241 CAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAACC 300 |||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 419 CAAGCTTTCCTAAGAGCCTTTACACATGTGACACGCTCGTTTGTTTAACTCTATCCAACC 478 Query 301 AGATTCTAGTGGATGTTTCCTCCCCGGCT--TCCTTACCATCTCTCTTATATTTGAGTCT 358 ||||||| |||||||| || ||||||||| || | ||||||||||||| |||||||||| Sbjct 479 AGATTCTGGTGGATGTGTCTTCCCCGGCTAGTC-T-ACCATCTCTCTTAGATTTGAGTCT 536 Query 359 TCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTAT 418 ||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | Sbjct 537 TCATTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTCTTATCAAGTTCCCCTGT 596 Query 419 TCTCAAGTGGCTGAGTGTGCATAGACATGAGAATGACAACTTGAAAACCTTTACCGTGAA 478 ||||||| |||||||||||||||| |||||| |||||||||| ||||||||||||||||| Sbjct 597 TCTCAAGAGGCTGAGTGTGCATAGTCATGAGGATGACAACTTAAAAACCTTTACCGTGAA 656 Query 479 AGTTTCTTCTTTAGAATCATTTTATTATGATGATAATTGGCTCAAGAATGAGGTAGAGGA 538 ||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||||| Sbjct 657 AGTTTCTTCCTTAGAATCATTAAATTATGATGAGAATTGGCTCAAGGATGAGGTAGAGGA 716 Query 539 TAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGA 583 ||||||| |||||||||||| || | ||| |||||||| | |||| Sbjct 717 TAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGA 761 Score = 531 bits (287), Expect = 9e-150 Identities = 372/411 (91%), Gaps = 13/411 (3%) Strand=Plus/Plus Query 870 GTTGCATGCTGTAACGCCATCAAGTTCTCCCGGCTCATAGAG--TTACATTTTCATCCAG 927 |||||||||||||||||||||||||||||| ||||||||||| |||| |||| |||| Sbjct 958 GTTGCATGCTGTAACGCCATCAAGTTCTCCTGGCTCATAGAGTTTTAC-TTTT-TTCCA- 1014 Query 928 ATGA-TTTAGTAGATTGGTTGATGCCACTTAtttttttGCTTCAAAATTCTCCTCAACTT 986 || | ||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||| Sbjct 1015 ATTAGTTTGGTAGATTGGTTGATGCCGCTTATGTTTTTGCTTCAAAATTCTCCTAAACTT 1074 Query 987 AAAACTCTTACGATTGACAATAACTTCGAGGGTCTCCCACTTTCCTGGAATCAGCCG-GT 1045 ||||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||||| || Sbjct 1075 AAAACTCCTACGATTGACAATGACTTCGAGTGTCTCTCACTTTCCTGGAACCAGCCGAGT 1134 Query 1046 ATCTATTCCCGGATGCTTGTTGTCTCATCTAGAGATCTTTAGGTGGGGAGACTATGGAGG 1105 |||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| Sbjct 1135 -TCTATTCCCGGATGCTTGTTGTCTCATCTAGAGACCTTTAGGTGGAGAGGCTATGGAGG 1193 Query 1106 AAGAGAAGATGAGAAACAACTA---ATGACATACATTCTGGCTAACTCAAAGTGTTTAAA 1162 ||||||||||| |||| ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1194 AAGAGAAGATGCGAAAAAACTACTGATGACATACATTCTCGCTAACTCAAAGTGTTTAAA 1253 Query 1163 GACAGTCGAGATATCCCTCTTAGCAACTTGCAATCTTGAAGACATACAAGAGGAGTTAGA 1222 |||||| ||||| |||||||||||||| |||||||||||||| | |||| |||||||| | Sbjct 1254 GACAGTGGAGATCTCCCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTAAA 1313 Query 1223 ATCTATGCCTAGGGTTTCAACA-TCATCTCAACTTCTAATCTCCACTAAAA 1272 ||||||||||||| ||||| || |||||||||||||||||||||||||||| Sbjct 1314 ATCTATGCCTAGGATTTCA-CAATCATCTCAACTTCTAATCTCCACTAAAA 1363 Score = 327 bits (177), Expect = 1e-88 Identities = 240/268 (90%), Gaps = 13/268 (5%) Strand=Plus/Plus Query 564 GATGCGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGAA 623 |||| ||||||||||||||||||||||||||||||||||||||||||||| | | | Sbjct 703 GATGAGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGA-G--G-T--- 755 Query 624 GATGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCTTTAAAA-AATTTGCAGTT 682 ||||||||||||||||||||||||||||||||||||||| |||||| || ||||| || Sbjct 756 --TGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCATTAAAAGAA-TTGCACTT 812 Query 683 ATATGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGAGGCATTCAT 742 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 813 ATCTGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGACGAGGCATTCAT 872 Query 743 CAACAATGTTCCAAACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCATACATCT 802 || ||||||||| |||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 873 CAGCAATGTTCCTTACCCCGATGAAAAGTTTCTGAGATCTCTTTCTTCTGTCAAACATCT 932 Query 803 GTACTTG-TATTTGACCAAATCAATGGT 829 | ||| | ||| | |||||||||||| Sbjct 933 CTTCTTACTGTTT-AGCAAATCAATGGT 959 > AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat domains containing protein | chr1:9317589-9319246 FORWARD LENGTH=1428 Length=1428 Score = 710 bits (384), Expect = 0.0 Identities = 700/844 (83%), Gaps = 55/844 (7%) Strand=Plus/Plus Query 1 GATGGCGTTATGTCTGGACGATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60 ||||||||||||||||| ||||||||||||||||||| |||||||| || | |||||||| Sbjct 206 GATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGA 265 Query 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 266 GCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTT 325 Query 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180 || |||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 326 TGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGA 385 Query 181 ACGCAGTTAATAGAGATGTTGAA-GATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCC 239 ||| ||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| ||| Sbjct 386 ACGTAGTTAATAGAGGTGT-GAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCC 444 Query 240 ACAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAAC 299 ||| ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| Sbjct 445 ACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAAC 504 Query 300 CAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTATATT-TGAGTC 357 ||||||||||| | ||||| ||||| | ||| | |||||||||||||| | | |||||| Sbjct 505 AAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA-ACTCTGAGTC 562 Query 358 TTCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTA 417 ||| || |||||||| |||||||| | ||||||||||| ||||||||||| || ||| Sbjct 563 TTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTG 622 Query 418 TTCTCAAGTGGCTGA-GTGTGCATAGACATGAGAATGACAACTTGA-AAACCTTTACCGT 475 ||||||| || |||| | ||| || ||||| || |||||||||||| ||| |||||||| Sbjct 623 TTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAAA-TTTACCGT 680 Query 476 GAAAGTTTCTTCTTTAGAATCATTTT-ATTATGATGA-TAATTGGCTCAAGAATGAGGTA 533 |||||| ||| | || ||| || || ||||| || | || | ||| ||| ||| |||| Sbjct 681 GAAAGTATCTACCTT-GAAACAGTTACATTATAAT-ACTACTCGGCGGAAGGATGGGGTA 738 Query 534 GAGGATAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGAGGTTGATGAG 593 |||||| ||| || || | | | | | ||||||| |||||||| | ||| Sbjct 739 GAGGAT---GAG---GA--AG--AC-G-T-G--G---TAGAGGAAAATGAGGT--A-GAG 777 Query 594 GTAGTGGATAATGAGGTAGAGGTTGATGAAGATGATGATCTCAATGGATCGTTGGTAATA 653 | | || || |||| | || | ||||| ||||||||||||| |||| ||||||||| Sbjct 778 G-A-TG-ATGATGA--T-GA--T-GATGA---TGATGATCTCAATAGATCCTTGGTAATA 825 Query 654 GATTCCCCTGCTTTAAAAAATTTGCAG-TTATATGAGGTTTGGGACTATTGCTTGATAGA 712 ||||||||||| ||| ||| ||| | | ||| | | |||| |||||||||||||||||| Sbjct 826 GATTCCCCTGCATTAGAAATTTTAC-GCTTACGTAACGTTTTGGACTATTGCTTGATAGA 884 Query 713 GAATATGTCTTTCCTTGATG-AGGCATT-CATCAACAATGTTCCA-AACCCCGATGACAA 769 |||||| |||| |||| || || || | || | |||||| | ||||||||| |||| Sbjct 885 GAATATTTCTTGCCTTCATATAG-CAAAAC-TCGGCTATGTTC-ATAACCCCGATCACAA 941 Query 770 GTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTGTATTTGACCAAATCAATGGT 829 ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| Sbjct 942 GTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGT 1001 Query 830 AGCG 833 ||| Sbjct 1002 TGCG 1005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64758703050 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5