BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921555
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 809 0.0
AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 710 0.0
> AT1G22000.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:7744189-7747785 FORWARD LENGTH=2504
Length=2504
Score = 809 bits (438), Expect = 0.0
Identities = 537/585 (92%), Gaps = 6/585 (1%)
Strand=Plus/Plus
Query 2 ATGGCGTTATGTCTGGAC-GATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60
|||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||
Sbjct 180 ATGGCGTTATGTCTGG-CTGATGCTGCCTAAACTCGAGTTCAAAGACGAAGGCAGCGAGA 238
Query 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120
||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct 239 GCGTTGGGTGGTTTATTAAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATTGTT 298
Query 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180
||||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 299 TGATTGTCGAACTCGGTCCACATTGTCCTATTGACGTCGATGTCAGAAAGTGGGTTGAGA 358
Query 181 ACGCAGTTAATAGAGATGTTGAAGATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCCA 240
|||||||||||||||||||| ||||||||||||||| ||||||||||| ||||| ||| |
Sbjct 359 ACGCAGTTAATAGAGATGTTAAAGATTTAGATTTCACGCTCCTCTGGAGCGCAGCGCCTA 418
Query 241 CAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAACC 300
|||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 419 CAAGCTTTCCTAAGAGCCTTTACACATGTGACACGCTCGTTTGTTTAACTCTATCCAACC 478
Query 301 AGATTCTAGTGGATGTTTCCTCCCCGGCT--TCCTTACCATCTCTCTTATATTTGAGTCT 358
||||||| |||||||| || ||||||||| || | ||||||||||||| ||||||||||
Sbjct 479 AGATTCTGGTGGATGTGTCTTCCCCGGCTAGTC-T-ACCATCTCTCTTAGATTTGAGTCT 536
Query 359 TCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTAT 418
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 537 TCATTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTCTTATCAAGTTCCCCTGT 596
Query 419 TCTCAAGTGGCTGAGTGTGCATAGACATGAGAATGACAACTTGAAAACCTTTACCGTGAA 478
||||||| |||||||||||||||| |||||| |||||||||| |||||||||||||||||
Sbjct 597 TCTCAAGAGGCTGAGTGTGCATAGTCATGAGGATGACAACTTAAAAACCTTTACCGTGAA 656
Query 479 AGTTTCTTCTTTAGAATCATTTTATTATGATGATAATTGGCTCAAGAATGAGGTAGAGGA 538
||||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||||
Sbjct 657 AGTTTCTTCCTTAGAATCATTAAATTATGATGAGAATTGGCTCAAGGATGAGGTAGAGGA 716
Query 539 TAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGA 583
||||||| |||||||||||| || | ||| |||||||| | ||||
Sbjct 717 TAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGA 761
Score = 531 bits (287), Expect = 9e-150
Identities = 372/411 (91%), Gaps = 13/411 (3%)
Strand=Plus/Plus
Query 870 GTTGCATGCTGTAACGCCATCAAGTTCTCCCGGCTCATAGAG--TTACATTTTCATCCAG 927
|||||||||||||||||||||||||||||| ||||||||||| |||| |||| ||||
Sbjct 958 GTTGCATGCTGTAACGCCATCAAGTTCTCCTGGCTCATAGAGTTTTAC-TTTT-TTCCA- 1014
Query 928 ATGA-TTTAGTAGATTGGTTGATGCCACTTAtttttttGCTTCAAAATTCTCCTCAACTT 986
|| | ||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 1015 ATTAGTTTGGTAGATTGGTTGATGCCGCTTATGTTTTTGCTTCAAAATTCTCCTAAACTT 1074
Query 987 AAAACTCTTACGATTGACAATAACTTCGAGGGTCTCCCACTTTCCTGGAATCAGCCG-GT 1045
||||||| ||||||||||||| |||||||| ||||| ||||||||||||| |||||| ||
Sbjct 1075 AAAACTCCTACGATTGACAATGACTTCGAGTGTCTCTCACTTTCCTGGAACCAGCCGAGT 1134
Query 1046 ATCTATTCCCGGATGCTTGTTGTCTCATCTAGAGATCTTTAGGTGGGGAGACTATGGAGG 1105
|||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||
Sbjct 1135 -TCTATTCCCGGATGCTTGTTGTCTCATCTAGAGACCTTTAGGTGGAGAGGCTATGGAGG 1193
Query 1106 AAGAGAAGATGAGAAACAACTA---ATGACATACATTCTGGCTAACTCAAAGTGTTTAAA 1162
||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1194 AAGAGAAGATGCGAAAAAACTACTGATGACATACATTCTCGCTAACTCAAAGTGTTTAAA 1253
Query 1163 GACAGTCGAGATATCCCTCTTAGCAACTTGCAATCTTGAAGACATACAAGAGGAGTTAGA 1222
|||||| ||||| |||||||||||||| |||||||||||||| | |||| |||||||| |
Sbjct 1254 GACAGTGGAGATCTCCCTCTTAGCAACCTGCAATCTTGAAGAGACACAAAAGGAGTTAAA 1313
Query 1223 ATCTATGCCTAGGGTTTCAACA-TCATCTCAACTTCTAATCTCCACTAAAA 1272
||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1314 ATCTATGCCTAGGATTTCA-CAATCATCTCAACTTCTAATCTCCACTAAAA 1363
Score = 327 bits (177), Expect = 1e-88
Identities = 240/268 (90%), Gaps = 13/268 (5%)
Strand=Plus/Plus
Query 564 GATGCGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGAGGTTGATGAA 623
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 703 GATGAGGTAGAGGATAATGAGGTTGATGAGGTAGTGGATAATGAGGTAGA-G--G-T--- 755
Query 624 GATGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCTTTAAAA-AATTTGCAGTT 682
||||||||||||||||||||||||||||||||||||||| |||||| || ||||| ||
Sbjct 756 --TGATGATCTCAATGGATCGTTGGTAATAGATTCCCCTGCATTAAAAGAA-TTGCACTT 812
Query 683 ATATGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGATGAGGCATTCAT 742
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 813 ATCTGAGGTTTGGGACTATTGCTTGATAGAGAATATGTCTTTCCTTGACGAGGCATTCAT 872
Query 743 CAACAATGTTCCAAACCCCGATGACAAGTTTCTGAGATCTCTTTCTTCTGTCATACATCT 802
|| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 873 CAGCAATGTTCCTTACCCCGATGAAAAGTTTCTGAGATCTCTTTCTTCTGTCAAACATCT 932
Query 803 GTACTTG-TATTTGACCAAATCAATGGT 829
| ||| | ||| | ||||||||||||
Sbjct 933 CTTCTTACTGTTT-AGCAAATCAATGGT 959
> AT1G26890.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:9317589-9319246 FORWARD LENGTH=1428
Length=1428
Score = 710 bits (384), Expect = 0.0
Identities = 700/844 (83%), Gaps = 55/844 (7%)
Strand=Plus/Plus
Query 1 GATGGCGTTATGTCTGGACGATGGTGCCTAGACTCGAGTTCAAAGACGAAGGCAGCGAGA 60
||||||||||||||||| ||||||||||||||||||| |||||||| || | ||||||||
Sbjct 206 GATGGCGTTATGTCTGGCCGATGGTGCCTAGACTCGAATTCAAAGAAGATGACAGCGAGA 265
Query 61 GCGTTGGGTGGTTTATTGAGAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATGGTT 120
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 266 GCGTGGGGTGGTTTATTGAAAAGTCATTGCAACTCCATAAGGCACCGAAACTAGATAGTT 325
Query 121 TGATTGTCGAAATCGGTCCACATTGTCCTTTTGACGTAGATGTTGGAAAGTGGGTTGAGA 180
|| |||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 326 TGGTTGTGGAACTCGGTCCACATTGTCCTGTTGACGTAGATGTCGGAAAGTGGGTTGAGA 385
Query 181 ACGCAGTTAATAGAGATGTTGAA-GATTTAGATTTCAAGCTCCTCTGGACCGCAGAGCCC 239
||| ||||||||||| ||| ||| || ||||||||||| ||||||||||||||||| |||
Sbjct 386 ACGTAGTTAATAGAGGTGT-GAAAGAGTTAGATTTCAATCTCCTCTGGACCGCAGAACCC 444
Query 240 ACAAGATTTCCTAAGTGCCTTTACACATGTGACACGCTCGTTTATTTAACTCTATCCAAC 299
||| ||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 445 ACAGGATTTCCTAAGTGCCTTTACACATGCAACACGCTCGTTGATTTAAGTCTATCCAAC 504
Query 300 CAGATTCTAGTGGATGTTTCCTCCCCGGCTTC-CTTACCATCTCTCTTATATT-TGAGTC 357
||||||||||| | ||||| ||||| | ||| | |||||||||||||| | | ||||||
Sbjct 505 AAGATTCTAGTGAACGTTTCTTCCCCTG-TTCGCCTACCATCTCTCTTA-ACTCTGAGTC 562
Query 358 TTCACTACGTGGTGTATAAAGACGATGGCTCTCTTGTTAGGCTTTTATCAAGTTCTCCTA 417
||| || |||||||| |||||||| | ||||||||||| ||||||||||| || |||
Sbjct 563 TTCGCTTTGTGGTGTACAAAGACGAAGAATCTCTTGTTAGCCTTTTATCAAGCTCCCCTG 622
Query 418 TTCTCAAGTGGCTGA-GTGTGCATAGACATGAGAATGACAACTTGA-AAACCTTTACCGT 475
||||||| || |||| | ||| || ||||| || |||||||||||| ||| ||||||||
Sbjct 623 TTCTCAACTGCCTGAAG-GTGGATCGACATAAGGATGACAACTTGACAAAA-TTTACCGT 680
Query 476 GAAAGTTTCTTCTTTAGAATCATTTT-ATTATGATGA-TAATTGGCTCAAGAATGAGGTA 533
|||||| ||| | || ||| || || ||||| || | || | ||| ||| ||| ||||
Sbjct 681 GAAAGTATCTACCTT-GAAACAGTTACATTATAAT-ACTACTCGGCGGAAGGATGGGGTA 738
Query 534 GAGGATAATGAGATTGATGAGGTAGAGGTTGATGCGGTAGAGGATAATGAGGTTGATGAG 593
|||||| ||| || || | | | | | ||||||| |||||||| | |||
Sbjct 739 GAGGAT---GAG---GA--AG--AC-G-T-G--G---TAGAGGAAAATGAGGT--A-GAG 777
Query 594 GTAGTGGATAATGAGGTAGAGGTTGATGAAGATGATGATCTCAATGGATCGTTGGTAATA 653
| | || || |||| | || | ||||| ||||||||||||| |||| |||||||||
Sbjct 778 G-A-TG-ATGATGA--T-GA--T-GATGA---TGATGATCTCAATAGATCCTTGGTAATA 825
Query 654 GATTCCCCTGCTTTAAAAAATTTGCAG-TTATATGAGGTTTGGGACTATTGCTTGATAGA 712
||||||||||| ||| ||| ||| | | ||| | | |||| ||||||||||||||||||
Sbjct 826 GATTCCCCTGCATTAGAAATTTTAC-GCTTACGTAACGTTTTGGACTATTGCTTGATAGA 884
Query 713 GAATATGTCTTTCCTTGATG-AGGCATT-CATCAACAATGTTCCA-AACCCCGATGACAA 769
|||||| |||| |||| || || || | || | |||||| | ||||||||| ||||
Sbjct 885 GAATATTTCTTGCCTTCATATAG-CAAAAC-TCGGCTATGTTC-ATAACCCCGATCACAA 941
Query 770 GTTTCTGAGATCTCTTTCTTCTGTCATACATCTGTACTTGTATTTGACCAAATCAATGGT 829
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 942 GTTTCTGAGATCTCTTTCTTCTGTCATACATATGTACTTGTATTTGACCAAGCCAATGGT 1001
Query 830 AGCG 833
|||
Sbjct 1002 TGCG 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5