BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921570

Length=313
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:255...   364    2e-100
  AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-assoc...   303    5e-82 


> AT5G63880.2 | Symbols: VPS20.1 | SNF7 family protein | chr5:25563724-25565434 
FORWARD LENGTH=1074
Length=1074

 Score =  364 bits (197),  Expect = 2e-100
 Identities = 225/238 (95%), Gaps = 3/238 (1%)
 Strand=Plus/Plus

Query  2    TCGATAAAGTGAAGAAAATATGGGAAATTTGTTCCTGAAGAAACCTCAGATCACGGAGGT  61
            ||||| |||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||
Sbjct  149  TCGAT-AAGTGAAGAAAAGATGGGGAATTTGTTCGTGAAGAAACCACAGATCACGGAGGT  207

Query  62   TGATCGAGTGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAAAA  121
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  208  TGATCGAGCGATTCTCTCTCTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAGAA  267

Query  122  GCTTGAGAAAGTAATTGAAGCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCG  181
            ||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct  268  GCTTGAGAAAGTAATTGAAGCGGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAAAAGCG  327

Query  182  AAAGGACAGA-CTTTTGTTAGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAA  238
            |||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct  328  AAAGGACAGAGCTTT-GTTAGCATTGAGGAAGAAACGAACTCAAGAAGAGTTATTGAA  384


> AT5G09260.1 | Symbols: VPS20.2 | vacuolar protein sorting-associated 
protein 20.2 | chr5:2876753-2878700 FORWARD LENGTH=1040
Length=1040

 Score =  303 bits (164),  Expect = 5e-82
 Identities = 201/219 (92%), Gaps = 2/219 (1%)
 Strand=Plus/Plus

Query  21   ATGGGAAATTTGTTCCTGAAGAAACCTCAGATCACGGAGGTTGATCGAGTGATTCTCTCT  80
            ||||| ||||| ||| ||||||||||  ||||||||||||||||||||| ||||||||||
Sbjct  45   ATGGGGAATTTATTCGTGAAGAAACCGAAGATCACGGAGGTTGATCGAGCGATTCTCTCT  104

Query  81   CTCAAAACCCAAAGACGCAAGCTTGGTCAATATCAGCAAAAGCTTGAGAAAGTAATTGAA  140
            |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  105  CTCAAAACCCAAAGGCGCAAGCTTGGTCAATATCAGCAACAGCTTGAGAAAGTAATTGAA  164

Query  141  GCCGAAAAGCAAGCTGCAAGAGACTTAATCCGCGAGAAGCGAAAGGACAGA-CTTTTGTT  199
            || ||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||
Sbjct  165  GCAGAAAAGCAAGCTGCAAGAGACTTAATCCGTGAGAAGCGAAAGGACAGGGCTTT-GTT  223

Query  200  AGCATTGAGGAAGAAACGAACCCAAGAAGAGTTATTGAA  238
            |||||||| ||| ||||| || ||||||||||| |||||
Sbjct  224  AGCATTGAAGAAAAAACGGACACAAGAAGAGTTGTTGAA  262



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14527379461


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5