BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921577
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 734 0.0
AT1G26710.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 691 0.0
> AT1G26720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26710.1); Has
9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr1:9234303-9234812
REVERSE LENGTH=510
Length=510
Score = 734 bits (397), Expect = 0.0
Identities = 478/516 (93%), Gaps = 9/516 (2%)
Strand=Plus/Plus
Query 24 ATGACAACACCAACATAT-ACTCTTTTATGCATACGATCATTCATGTTCTTACTATGTTT 82
|||||||||||||||||| || |||||||||||| ||||||||||||| |||||||||||
Sbjct 1 ATGACAACACCAACATATAAC-CTTTTATGCATAGGATCATTCATGTTTTTACTATGTTT 59
Query 83 CAGCATTGCCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGTGACACTCTATTTGCAC- 141
|||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||| |
Sbjct 60 CAGCATTGGCTTTGGTCGCAAAAACCTACAAGACAAGCTCGGTGACACTCTATTTGC-CT 118
Query 142 CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTACTAATTCCGAAGCTACCG 201
||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| |
Sbjct 119 CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTGGTTTCTAACACCGAAGCTAGAG 178
Query 202 ACATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGAGATGCATCACATTTACA 261
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 179 ACATTTCAGGTAGTATTGGTTTGGGAGAGGTTGGAAGTCAAGAGATGCATCATATTTACA 238
Query 262 TAGAAACAAGTAAAGATTCGAGTCTCGGAAATAAACAAGACAATATAAACTCTGTGCCTA 321
|||||||| || ||||||| ||||| | ||||||||||||||||||||||||| ||||||
Sbjct 239 TAGAAACAGGTGAAGATTCAAGTCTTGTAAATAAACAAGACAATATAAACTCTATGCCTA 298
Query 322 GGAAGATTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCATCAAGA-TTCAG 380
||||| ||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 299 GGAAGGTTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCATCA-GAATTAAG 357
Query 381 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGACATAAACCAATTCAATGAAGAAGAG 440
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 358 GTTCCTATTCCGAAGCCAAATATTACGGTGGCTGAAAGAAACCAACTCAATGAAGAAGAG 417
Query 441 ATGAGTAAAGGTATTGTCATAACTCCAACGAAGACTAATGAGTTTGGTATTTCCCTTGGA 500
|| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 418 AT---TAAAGGCATTGTCATAACTCCAACGAAGACTAATGAGTTTGGTCTTTCCCTTGGA 474
Query 501 AATGACGGTGCAGAGCTCGGATACAGCTACCAATAA 536
||||||||||||||||||||||||| ||||||||||
Sbjct 475 AATGACGGTGCAGAGCTCGGATACAACTACCAATAA 510
> AT1G26710.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G26720.1);
Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:9232328-9233144
REVERSE LENGTH=817
Length=817
Score = 691 bits (374), Expect = 0.0
Identities = 473/521 (91%), Gaps = 6/521 (1%)
Strand=Plus/Plus
Query 12 AAGGTGGAGAAAATGACAACACCAACATAT-ACTCTTTTATGCATACGATCATTCATGTT 70
||||||||||||||||||| |||||||||| || |||||||||||| |||||||||| ||
Sbjct 7 AAGGTGGAGAAAATGACAATACCAACATATAAC-CTTTTATGCATAGGATCATTCATTTT 65
Query 71 CTTACTATGTTTCAGCATTGCCTTTGGTCGCAAGAACCTAGAAGATAAGCTCGGTGACAC 130
||||||||||||||||||| ||||||||||||| |||||| ||| |||| ||||| |||
Sbjct 66 CTTACTATGTTTCAGCATTACCTTTGGTCGCAAAAACCTACTAGACAAGCCCGGTGGCAC 125
Query 131 TCTATTTGCAC-CCAAACCTGTTGAAGCAACCGAGCTTAGAGCCGCTTTAGTTACTAATT 189
||||| ||| | |||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 126 TCTATATGC-CTCCAAACCTGTTGAAGCCGCCGAGCTTAGAGCCACTTTGGTTACTAATA 184
Query 190 CCGAAGCTACCGACATTTCAAGTAGTATTGGTTTGGGAGAAGTTGGAAGTCAAGAGATGC 249
|| |||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 185 CCAAAGCTAGAGACATTTCAAGTAATATTGGTTTGGGAGAGGTTGGAAGTCAAGAGATGC 244
Query 250 ATCACATTTACATAGAAACAAGTAAAGATTCGAGTCTCGGAAATAAACAAGACAATATAA 309
|||||| |||||||| |||| || ||||||| ||||| ||||||||||||||||||||||
Sbjct 245 ATCACACTTACATAGGAACAGGTGAAGATTCAAGTCTTGGAAATAAACAAGACAATATAA 304
Query 310 ACTCTGTGCCTAGGAAGATTATAAGGGGTACCGTTTCCATCTCATTCTCATTTCCTATCA 369
||||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 305 ACTCTGTGCCTAGGAAGGTTATAAGAGGTATCGTTTCCATCTCATTCGCATTTCCTATCA 364
Query 370 TCAAGATTCAGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGACATAAACCAATTCA 429
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 365 TCAAGATTCAGGTTCCTATTCCGAAGCCAAATATTACGGTGGCTGCCATAAACCAACTCG 424
Query 430 ATGAAGAAGAGATGAGTAAAGGTATTGTCATAACTCCAACGAAGACTAATGAGTT-TGGT 488
||||||||||||||| |||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 425 ATGAAGAAGAGATGATTAAAGGCATTGTCATAACTCCAACAAAGACTAATGAGTTGTG-T 483
Query 489 ATTTCCCTTGGAAATGACGGTGCAGAGCTCGGATACAGCTA 529
||||||||||||||| ||| || ||||||| |||||||||
Sbjct 484 ATTTCCCTTGGAAATTACGATGTAGAGCTCTCATACAGCTA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5