BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921580

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-...   165    1e-40


> AT3G16320.1 | Symbols: CDC27a | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:5529534-5534663 FORWARD LENGTH=2352
Length=2352

 Score =  165 bits (89),  Expect = 1e-40
 Identities = 106/114 (93%), Gaps = 1/114 (1%)
 Strand=Plus/Plus

Query  10   AAA-GTTCAAAAATGACTCGGTCTCGGTATTTATTTGCATTCTCATCCTTTAAGTTGGAT  68
            ||| ||||||||| | ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  178  AAAGGTTCAAAAACGCCTCAGTCTCGGTATTTATTTGCATTCTCATGCTTTAAGTTGGAT  237

Query  69   CTTCTTGGAGAGGCTGAAGCTGCATTGTTGACCAGTGAAGATTATGTTGAAGAA  122
            |||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct  238  CTTCTTGGAGAGGCTGAAGCTGCATTGTTGCCCTGTGAAGATTATGCTGAAGAA  291



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8551229670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5