BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921606 Length=1544 Score E Sequences producing significant alignments: (Bits) Value AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2265 0.0 > AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:9158380-9159897 FORWARD LENGTH=1518 Length=1518 Score = 2265 bits (1226), Expect = 0.0 Identities = 1409/1500 (94%), Gaps = 2/1500 (0%) Strand=Plus/Plus Query 22 ATGGCTATCGCCGTCGTTTCTTCACGGAGGATGATTAACATCGGGAACCCAATTTGGCGA 81 |||||| | |||||||| |||| |||||||||||||||||||| ||| ||||| ||||| Sbjct 1 ATGGCTGTGGCCGTCGTGACTTCTCGGAGGATGATTAACATCGGAAACTCAATTCGGCGA 60 Query 82 TTCTTCATGCTCAAACACCGCTTCTTTTCCACCGAGTTAACTCCAACCACCATCACACCG 141 | |||||| ||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| Sbjct 61 TGCTTCATTCTCAACCACCGCTTCTTCTCCACCGAGCTAACTCCAACCACAATCACACCG 120 Query 142 ATAAACCAAGACCATCTCCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCGCCT 201 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 ATAAACCAAGACCATCTTCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCACCT 180 Query 202 GATTCCCGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACACACGAGTTCTTC 261 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 GATTCACGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACTCACGAGTTCTTC 240 Query 262 CTCCAAGTCTGCAACAATTTCCCCCTCTCATGGCGTCCGGTACACCGTTTCTTCCTCTAT 321 ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| Sbjct 241 CTCCAAGTCTGCAACAATTTCCCACTCTCGTGGCGTCCTGTACACCGTTTCTTCCTCTAT 300 Query 322 TCTCAGATTCACCACCCTGATTTCGTCCACACTTCCACTACCTCTAATAAGATGCTTGCA 381 ||||| | |||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 301 TCTCAAACTCACCACCCTGATTTCACCCACACTTCCACTACCTCTAATAAGATGCTAGCA 360 Query 382 ATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTGGCTCAAGAGATCGGGAAA 441 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 361 ATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTAGCTCAAGAGATCGGAAAA 420 Query 442 CATGGATTGGTTAACGATAAGACGTTTCGGATTGTGTTGAAAACACTTGCTTCTGCTCGA 501 | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || Sbjct 421 CGTGGATTGGTTAACGATAAGACATTTCGGATTGTGTTGAAAACACTTGCTTCTGCTAGA 480 Query 502 GAATTGAAGAAATGTGTTAACTTTTTCCATTTGATGAACGATTTTGGGTATTTGTATAAT 561 || |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| Sbjct 481 GAGTTGAAGAAATGTGTAAACTATTTCCATTTGATGAACGGTTTTGGGTATTTGTATAAT 540 Query 562 GTGCAAACGATGAATAGAGGAGCGGAGACTCTGTGTAAGGAGAAGCTTGTGGAAGAAGCT 621 ||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 541 GTGGAAACGATGAATAGAGGAGTGGAGACTCTGTGTAAGGAGAAGCTTGTTGAAGAAGCT 600 Query 622 AAGTTTGTTGTTGTTAAGCTGAAAGAGTTTATCAAACCTGATGAGATTACTTATAGGACG 681 ||||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 601 AAGTTTGTTTTTATTAAGCTGAAGGAGTTTATTAAACCTGATGAGATTACTTATAGGACG 660 Query 682 ATGATTA-AAGGGTTTTGTGATGTCGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTT 740 |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 661 ATGA-TACAAGGGTTTTGTGATGTTGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTT 719 Query 741 GATGATGGATGAAGGATTTGAGGTTGATATTGAAGCTGGTCAAAAGATTATGGAAACATT 800 ||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | Sbjct 720 GATGATGGATGAAGGATTTGATGTTGATATCGAAGCTGGTAAAAAGATTATGGAAACACT 779 Query 801 TCTAAAGAAGAACCAGTTTGATGAAGCTTCGAAGGTCTTTCATGTGATGGTTTCGAAGAG 860 ||| |||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||| || Sbjct 780 TCTGAAGAAGAATCAGTTTGATGAAGCTTCTAAGGTGTTTTATGTTATGGTTTCGAAAAG 839 Query 861 AGGTTGTGATTTGGATGGGTCTTTCTACAGGGTTATGATTGATTGGTTGTGTAAAAACGG 920 |||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 840 AGGTGGTGATTTGGATGGGGGTTTCTACAGGGTGATGATTGATTGGTTGTGTAAAAACGG 899 Query 921 TAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAAAGAGGTGTTCAGGTGGA 980 |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 900 TAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAGAGAGGTGTTTATGTGGA 959 Query 981 TAACTTAACTTGGGCGTCGATAATCTATGGACTGTTGGTTAAACGAAGAGTTGCAGAGGC 1040 ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| Sbjct 960 TAACTTAACTTGGGCGTCGTTAATCTATGGACTGTTGGTTAAACGAAGAGTTGTAGAGGC 1019 Query 1041 GTATAAGACAGTGGAAGCGGTTGAGAATCCGGATATTAGTATCTATCATGCATTGATAAA 1100 ||| | ||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1020 TTATGGGTTGGTGGAAGGGGTTGAGAATCCGGATATTAGTATCTATCATGGGTTGATAAA 1079 Query 1101 AGGGTTGGTGAAGATTAAACGGGCAAGCGAGGCAACAGAGGTTTTCAGGAAGATGATACA 1160 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1080 AGGGTTGGTGAAGATTAAACGGGCAAGCGAAGCAACAGAGGTTTTCAGGAAGATGATACA 1139 Query 1161 GAGAGGGTGCGAGCCTATAATGCATACGTATCTTATGTTGCTGCAAGGACATTTGGGTAG 1220 ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| || Sbjct 1140 GAGAGGGTGCGAGCCAATAATGCATACGTATCTTATGTTGTTGCAAGGACATTTGGGGAG 1199 Query 1221 GAGAGGAAGGAAAGGACCAGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTAT 1280 || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 AAGGGGAAGGAAAGGGCCGGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTAT 1259 Query 1281 GATCAAGGCAGGGAAACGGTTGGAAACTACAAAGTATGTTGAGAGAACGTTGAAGAGAGG 1340 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1260 GATCAAGGCGGGGAAACGGTTGGAAACTACAAAGTATATTGAGAGAACGTTGAAGAGAGG 1319 Query 1341 GCTTGAAGTTCCTAGATTTGATTATAGCAAGTTCTTGCATTGTTATTCTAATGAGGAAGG 1400 ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1320 GCTTGAAGTTCCTAGGTTTGATTATAGCAAGTTCTTGCATTATTATTCTAATGAGGAAGG 1379 Query 1401 TGTGTTTATGTTTGAAGAGATGGCCAAGAAACTTAGAGAAGTGAGCTTGTTTGATTTGGC 1460 |||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 1380 TGTGGTTATGTTTGAAGAGATGGCTAAGAAACTTAGAGAAGTGAGTTTGTTTGATTTGGC 1439 Query 1461 TGATATTTTCCagaggtatggagagaagatgactacacgagagagaaggagagatagaga 1520 |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1440 TGATATATTCCAGAGGTATGGAGAGAAGATGACTACAAGAGAGAGAAGGAGAGATAGAGA 1499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76204427310 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5