BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921606
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2265 0.0
> AT1G26500.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:9158380-9159897 FORWARD LENGTH=1518
Length=1518
Score = 2265 bits (1226), Expect = 0.0
Identities = 1409/1500 (94%), Gaps = 2/1500 (0%)
Strand=Plus/Plus
Query 22 ATGGCTATCGCCGTCGTTTCTTCACGGAGGATGATTAACATCGGGAACCCAATTTGGCGA 81
|||||| | |||||||| |||| |||||||||||||||||||| ||| ||||| |||||
Sbjct 1 ATGGCTGTGGCCGTCGTGACTTCTCGGAGGATGATTAACATCGGAAACTCAATTCGGCGA 60
Query 82 TTCTTCATGCTCAAACACCGCTTCTTTTCCACCGAGTTAACTCCAACCACCATCACACCG 141
| |||||| ||||| ||||||||||| ||||||||| ||||||||||||| |||||||||
Sbjct 61 TGCTTCATTCTCAACCACCGCTTCTTCTCCACCGAGCTAACTCCAACCACAATCACACCG 120
Query 142 ATAAACCAAGACCATCTCCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCGCCT 201
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATAAACCAAGACCATCTTCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCACCT 180
Query 202 GATTCCCGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACACACGAGTTCTTC 261
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GATTCACGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACTCACGAGTTCTTC 240
Query 262 CTCCAAGTCTGCAACAATTTCCCCCTCTCATGGCGTCCGGTACACCGTTTCTTCCTCTAT 321
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 241 CTCCAAGTCTGCAACAATTTCCCACTCTCGTGGCGTCCTGTACACCGTTTCTTCCTCTAT 300
Query 322 TCTCAGATTCACCACCCTGATTTCGTCCACACTTCCACTACCTCTAATAAGATGCTTGCA 381
||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 301 TCTCAAACTCACCACCCTGATTTCACCCACACTTCCACTACCTCTAATAAGATGCTAGCA 360
Query 382 ATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTGGCTCAAGAGATCGGGAAA 441
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 361 ATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTAGCTCAAGAGATCGGAAAA 420
Query 442 CATGGATTGGTTAACGATAAGACGTTTCGGATTGTGTTGAAAACACTTGCTTCTGCTCGA 501
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 421 CGTGGATTGGTTAACGATAAGACATTTCGGATTGTGTTGAAAACACTTGCTTCTGCTAGA 480
Query 502 GAATTGAAGAAATGTGTTAACTTTTTCCATTTGATGAACGATTTTGGGTATTTGTATAAT 561
|| |||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 481 GAGTTGAAGAAATGTGTAAACTATTTCCATTTGATGAACGGTTTTGGGTATTTGTATAAT 540
Query 562 GTGCAAACGATGAATAGAGGAGCGGAGACTCTGTGTAAGGAGAAGCTTGTGGAAGAAGCT 621
||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 541 GTGGAAACGATGAATAGAGGAGTGGAGACTCTGTGTAAGGAGAAGCTTGTTGAAGAAGCT 600
Query 622 AAGTTTGTTGTTGTTAAGCTGAAAGAGTTTATCAAACCTGATGAGATTACTTATAGGACG 681
||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 601 AAGTTTGTTTTTATTAAGCTGAAGGAGTTTATTAAACCTGATGAGATTACTTATAGGACG 660
Query 682 ATGATTA-AAGGGTTTTGTGATGTCGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTT 740
|||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 661 ATGA-TACAAGGGTTTTGTGATGTTGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTT 719
Query 741 GATGATGGATGAAGGATTTGAGGTTGATATTGAAGCTGGTCAAAAGATTATGGAAACATT 800
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||| |
Sbjct 720 GATGATGGATGAAGGATTTGATGTTGATATCGAAGCTGGTAAAAAGATTATGGAAACACT 779
Query 801 TCTAAAGAAGAACCAGTTTGATGAAGCTTCGAAGGTCTTTCATGTGATGGTTTCGAAGAG 860
||| |||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||| ||
Sbjct 780 TCTGAAGAAGAATCAGTTTGATGAAGCTTCTAAGGTGTTTTATGTTATGGTTTCGAAAAG 839
Query 861 AGGTTGTGATTTGGATGGGTCTTTCTACAGGGTTATGATTGATTGGTTGTGTAAAAACGG 920
|||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 840 AGGTGGTGATTTGGATGGGGGTTTCTACAGGGTGATGATTGATTGGTTGTGTAAAAACGG 899
Query 921 TAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAAAGAGGTGTTCAGGTGGA 980
|||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 900 TAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAGAGAGGTGTTTATGTGGA 959
Query 981 TAACTTAACTTGGGCGTCGATAATCTATGGACTGTTGGTTAAACGAAGAGTTGCAGAGGC 1040
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 960 TAACTTAACTTGGGCGTCGTTAATCTATGGACTGTTGGTTAAACGAAGAGTTGTAGAGGC 1019
Query 1041 GTATAAGACAGTGGAAGCGGTTGAGAATCCGGATATTAGTATCTATCATGCATTGATAAA 1100
||| | ||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 TTATGGGTTGGTGGAAGGGGTTGAGAATCCGGATATTAGTATCTATCATGGGTTGATAAA 1079
Query 1101 AGGGTTGGTGAAGATTAAACGGGCAAGCGAGGCAACAGAGGTTTTCAGGAAGATGATACA 1160
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 AGGGTTGGTGAAGATTAAACGGGCAAGCGAAGCAACAGAGGTTTTCAGGAAGATGATACA 1139
Query 1161 GAGAGGGTGCGAGCCTATAATGCATACGTATCTTATGTTGCTGCAAGGACATTTGGGTAG 1220
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1140 GAGAGGGTGCGAGCCAATAATGCATACGTATCTTATGTTGTTGCAAGGACATTTGGGGAG 1199
Query 1221 GAGAGGAAGGAAAGGACCAGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTAT 1280
|| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGGGGAAGGAAAGGGCCGGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTAT 1259
Query 1281 GATCAAGGCAGGGAAACGGTTGGAAACTACAAAGTATGTTGAGAGAACGTTGAAGAGAGG 1340
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 GATCAAGGCGGGGAAACGGTTGGAAACTACAAAGTATATTGAGAGAACGTTGAAGAGAGG 1319
Query 1341 GCTTGAAGTTCCTAGATTTGATTATAGCAAGTTCTTGCATTGTTATTCTAATGAGGAAGG 1400
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1320 GCTTGAAGTTCCTAGGTTTGATTATAGCAAGTTCTTGCATTATTATTCTAATGAGGAAGG 1379
Query 1401 TGTGTTTATGTTTGAAGAGATGGCCAAGAAACTTAGAGAAGTGAGCTTGTTTGATTTGGC 1460
|||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1380 TGTGGTTATGTTTGAAGAGATGGCTAAGAAACTTAGAGAAGTGAGTTTGTTTGATTTGGC 1439
Query 1461 TGATATTTTCCagaggtatggagagaagatgactacacgagagagaaggagagatagaga 1520
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1440 TGATATATTCCAGAGGTATGGAGAGAAGATGACTACAAGAGAGAGAAGGAGAGATAGAGA 1499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5