BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921611
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26450.1 | Symbols: | Carbohydrate-binding X8 domain superf... 852 0.0
AT1G69295.1 | Symbols: PDCB4 | plasmodesmata callose-binding pr... 279 2e-74
> AT1G26450.1 | Symbols: | Carbohydrate-binding X8 domain superfamily
protein | chr1:9148710-9150250 REVERSE LENGTH=1074
Length=1074
Score = 852 bits (461), Expect = 0.0
Identities = 588/647 (91%), Gaps = 18/647 (3%)
Strand=Plus/Plus
Query 3 CGATCAAGTTTTAGCAGTCATGGCGGTTTTGCTTCCTCTGTTTCTTCTCTCTTTCATGGT 62
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 169 CGATCAAGTTTAAGCAGTCATGGCGGTTTTGCTTCCTCTGTTTCTTCTCTCTTTCATGTT 228
Query 63 TACCTACTCAAACGCGGCGGTTTGTGTGTGCAAGGACGCGAGCGAGCTGGATCTTCAGAA 122
|||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 229 TACCTATTCAAACGCGGCGGTTTGTGTGTGCAAGGACGCTAACGAGCTGGATCTTCAGAA 288
Query 123 GGTGATAGACTTCGCATGTGGAGGAGGTGCTGACTGTACTCAGATTCAGACGACCGGAGC 182
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 289 GGTGATAGACTTCGCATGTGGAGGAGGTGCTGACTGTGCACAGATTCAGACGACCGGAGC 348
Query 183 TTGTTATCAACCAAACACCGTCAAGAACCACTGTGACGTCGCCGTTAACAGCTACTACCA 242
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||
Sbjct 349 TTGTTATCAACCAAACACCCTCAAGAACCACTGTGACGTTGCCGTTAACAGCTACTATCA 408
Query 243 GAAGAAAGCTTCTACCGGTGCCACCTGTGACTTTAACGGCGCCGCCGTCATCTCCACTTC 302
||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 409 AAAGAAAGCTTCCACCGGTGCCACATGTGACTTCAACGGCGCCGCCGTCATCTCCACTTC 468
Query 303 CCCTCCTTCGACTACGTCAAACTGTTTATCTAGTTCCAGCTCAAACGGAACCCCCACTGC 362
|||||||||||||||||||| ||||||||||||||| || || |||||||||||||||||
Sbjct 469 CCCTCCTTCGACTACGTCAAGCTGTTTATCTAGTTCTAGTTCCAACGGAACCCCCACTGC 528
Query 363 CGGATATCCATCAACCGGCAATTCAACCACCGCA-GCTCCAGGCACCACAAATCCAACCA 421
|||||||||||| ||||| ||||||||||| ||| | ||||||||||||||||||| |||
Sbjct 529 CGGATATCCATCCACCGGAAATTCAACCACAGCAAG-TCCAGGCACCACAAATCCATCCA 587
Query 422 CAGGAAATTCAACAAGCAGCACACTACCCACTGATGATAAGCCGACATCATCTACGATAG 481
|||| |||||||||| |||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 588 CAGGCAATTCAACAAACAGCACACTACCCACTAATGATAAGCCGACTTCATCTACGATAA 647
Query 482 CATTTCCTAACA---CTACTATGGGACCGTCCAGCAGCACCAGCGGTTTCGGTGTAGGTG 538
| |||||| ||| ||||||||||||| || |||||||| || | |||| | |
Sbjct 648 CGTTTCCTGACAGTACTACTATGGGACCATCTAGCAGCACGAG---T---GGTG-A--T- 697
Query 539 ATCCCAACGGTGGAGAAGAGCTCTCCGTCCGAAGCACGATGATTGTCTTGCTAACTACCA 598
|||||||||||||||||||| |||||| ||| ||||| ||| |||| || |||||||
Sbjct 698 --CCCAACGGTGGAGAAGAGCTATCCGTCAGAACCACGACGATCATCTTACTGACTACCA 755
Query 599 TCGCTGCCGTGGCATTGAGGGTTTAGGTGAGATCATCTCA-GATGAT 644
|||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 756 TCGCTGCCGTGGCATTGAGGGTTTAGGTAAGATCATCTCAAGATGAT 802
> AT1G69295.1 | Symbols: PDCB4 | plasmodesmata callose-binding
protein 4 | chr1:26050197-26052567 REVERSE LENGTH=1688
Length=1688
Score = 279 bits (151), Expect = 2e-74
Identities = 277/336 (82%), Gaps = 16/336 (5%)
Strand=Plus/Plus
Query 17 CAGTCATGGCGGTTTTGCTTCCTCTGTTTCT--TCTCTCTTTCATGGTT-ACCTACTCAA 73
|||||||| ||||||| |||||||| | ||| | | || | ||| ||| ||||| ||||
Sbjct 720 CAGTCATGTCGGTTTTACTTCCTCTCTGTCTGAT-TATC-TCCAT-GTTCACCTATTCAA 776
Query 74 ACGCGGCGGT-TTGTGTGTGCAAGGACGCGAGCGAGCTGGAT-CTTCAGAAGGTGATAGA 131
|||| || || |||| | ||||| || | || ||||| | | |||||||||| |||||
Sbjct 777 ACGCAGC-GTATTGTCTTTGCAAAGAGGGGAACGAGCAAG-TGCTTCAGAAGGCAATAGA 834
Query 132 CTTCGCATGTGGAGGA-GGTGCTGACTGTACTCAGATTCAGA-CGACCGGAGCTTGTTAT 189
|| ||| |||||| | || ||||||||||| ||||| || | | ||||||||||||||
Sbjct 835 CTACGCTTGTGGA-AATGGAGCTGACTGTACCCAGATCCA-ACCCACCGGAGCTTGTTAC 892
Query 190 CAACCAAACACCGTCAAGAACCACTGTGACGTCGCCGTTAACAGCTACTACCAGAAGAAA 249
||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 893 CAACCTAACACCGTCAAAAACCACTGTGACGTCGCCGTCAACAGTTACTACCAGAAAAAA 952
Query 250 GCTTCTACCGGTGCCACCTGTGACTTTAACGGCGCCGCCGTCATC-TCCACTTCCCCTCC 308
|||||| |||||||||||||||||||||||||||||||| || | || ||| |||||||
Sbjct 953 GCTTCTTCCGGTGCCACCTGTGACTTTAACGGCGCCGCC-TCCCCCTCTACTACCCCTCC 1011
Query 309 TTCGACTACGTCAAACTGTTTATCTAGTTCCAGCTC 344
|| ||| | |||||||||||| || |||| |||||
Sbjct 1012 GTCAACTGCTTCAAACTGTTTAACTGGTTCAAGCTC 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31094936993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5