BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921628
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS... 1260 0.0
AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box tr... 682 0.0
AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:245024... 174 1e-42
AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box t... 122 4e-27
AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box t... 89.8 4e-17
> AT1G26310.1 | Symbols: CAL, CAL1, AGL10 | K-box region and MADS-box
transcription factor family protein | chr1:9100153-9103603
REVERSE LENGTH=1038
Length=1038
Score = 1260 bits (682), Expect = 0.0
Identities = 772/814 (95%), Gaps = 11/814 (1%)
Strand=Plus/Plus
Query 1 ATTTAGTTATTTTACGAGAAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACA 60
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 74 ATTTAGTTATTTTAAGAGAAATGGGAAGGGGTAGGGTTGAATTGAAGAGGATAGAGAACA 133
Query 61 AGATCAATAGACAAGTGACATTCTCTAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCAGG 120
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 134 AGATCAATAGACAAGTGACATTCTCGAAAAGAAGAACTGGTCTTTTGAAGAAAGCTCAGG 193
Query 121 AGATCTCTGTTCTTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGGAAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 194 AGATCTCTGTTCTTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGCAAAT 253
Query 181 TGTTCGAGTACACCTCTGAATCTTGCATGGAGAAAGTACTCGAACGCTACGAGAGGTATT 240
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 254 TGTTCGAGTACTCCTCTGAATCTTGCATGGAGAAGGTACTAGAACGCTACGAGAGGTATT 313
Query 241 CGTACGCCGAGAGGCAGCTGATTGCACCTGACTCTCACATTAATGCACAGCCGAATTGGT 300
| ||||||||||| |||||||||||||||||||||||| ||||||||||| |||| ||||
Sbjct 314 CTTACGCCGAGAGACAGCTGATTGCACCTGACTCTCACGTTAATGCACAGACGAACTGGT 373
Query 301 CAATGGAGTATAGCAGGCTTAAGGCTAAGATCGAGCTTTTGGAGAGGAACCAAAGGCATT 360
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 374 CAATGGAGTATAGCAGGCTTAAGGCCAAGATTGAGCTTTTGGAGAGAAACCAAAGGCATT 433
Query 361 ATCTAGGAGAAGACTTGGAACCAATGAGCCTCAAGGATCTCCAAAATCTGGAGCAGCAGC 420
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 ATCTGGGAGAAGAGTTGGAACCAATGAGCCTCAAGGATCTCCAAAATCTGGAGCAGCAGC 493
Query 421 TTGAGACTGCTCTTAAGCACATTCGCTCCAGAAAAAATCAACTCATGTACGAGTCCCTCA 480
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 494 TTGAGACTGCTCTTAAGCACATTCGCTCCAGAAAAAATCAACTCATGAATGAGTCCCTCA 553
Query 481 ACCACCTCCAAAGAAAGGAGAATGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGA 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 554 ACCACCTCCAAAGAAAGGAGAAGGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGA 613
Query 541 TAAAGGAGAGGGAAAACATCCTAAGGACACAAA-AAACCCAATGTGAGCAGCTGAACCGC 599
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 614 TAAAGGAGAGGGAAAACATCCTAAGGACA-AAACAAACCCAATGTGAGCAGCTGAACCGC 672
Query 600 AAC--C-ACGATGTACCACCGCCGCAACCGCAACCATTTCAACACCCTCATCCTTACATG 656
| | | |||||||||||| ||| | | |||||||||||||||| |||| |||||||
Sbjct 673 AGCGTCGACGATGTACCACAGCC--A-C---AACCATTTCAACACCCCCATCTTTACATG 726
Query 657 ATCTCTCATCAGACTTCTCCTTTCCTAAATTTGGGTGGCATGTACCAAGGAGAAGATCAA 716
||| |||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||
Sbjct 727 ATCGCTCATCAGACTTCTCCTTTCCTAAATATGGGTGGTTTGTACCAAGAAGAAGACCAA 786
Query 717 ACGGCGATGAGGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATTACCTTGGC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACGGCGATGAGGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATTACCTTGGC 846
Query 777 TGTTACGCCGCTTGAATAGACTACATCGATCTAT 810
||||||||||||||||||||||||||||||||||
Sbjct 847 TGTTACGCCGCTTGAATAGACTACATCGATCTAT 880
> AT1G69120.1 | Symbols: AP1, AGL7 | K-box region and MADS-box
transcription factor family protein | chr1:25982330-25986313
REVERSE LENGTH=1228
Length=1228
Score = 682 bits (369), Expect = 0.0
Identities = 655/790 (83%), Gaps = 32/790 (4%)
Strand=Plus/Plus
Query 19 AAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 AAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGA 269
Query 79 CATTCTCTAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCAGGAGATCTCTGTTCTTTGTG 138
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 270 CATTCTCGAAAAGAAGAGCTGGTCTTTTGAAGAAAGCTCATGAGATCTCTGTTCTCTGTG 329
Query 139 ATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGGAAATTGTTCGAGTACACCTCTG 198
|||| || ||| | ||| ||||||||||||||||||| ||| | ||||| ||| || |||
Sbjct 330 ATGCTGAAGTTGCTCTTGTTGTCTTCTCCCATAAGGGAAAACTCTTCGAATACTCCACTG 389
Query 199 AATCTTGCATGGAGAA-AGTACTCGAACGCTACGAGAGGTATTCGTACGCCGAGAGGCAG 257
| ||||| |||||||| | |||| |||||||| |||||||| || |||||||| || |||
Sbjct 390 ATTCTTGTATGGAGAAGA-TACTTGAACGCTATGAGAGGTACTCTTACGCCGAAAGACAG 448
Query 258 CTGATTGCACCTGACTCTC-ACATTAATGCACAGCCGAATTGGTCAATGGAGTATAGCAG 316
|| ||||||||||| || | || | ||| ||| || ||||| |||||||||| |||
Sbjct 449 CTTATTGCACCTGAGTC-CGACGTCAAT--ACA----AACTGGTCGATGGAGTATAACAG 501
Query 317 GCTTAAGGCTAAGATCGAGCTTTTGGAGAGGAACCAAAGGCATTATCTAGGAGAAGACTT 376
||||||||||||||| |||||||||||||| ||||| ||||||||||| || ||||||||
Sbjct 502 GCTTAAGGCTAAGATTGAGCTTTTGGAGAGAAACCAGAGGCATTATCTTGGGGAAGACTT 561
Query 377 GGAACCAATGAGCC-TCAAGGATCTCCAAAATCTGGAGCAGCAGCTTGAGACTGCTCTTA 435
| || ||||||||| | ||| | || || |||||||||||||||||||| ||||||||||
Sbjct 562 GCAAGCAATGAGCCCTAAAG-AGCTTCAGAATCTGGAGCAGCAGCTTGACACTGCTCTTA 620
Query 436 AGCACATTCGCTCCAGAAAAAATCAACTCATGTACGAGTCCCTCAACCACCTCCAAAGAA 495
||||||| ||| | |||||||| ||||| |||||||||||| |||| | ||||||| ||
Sbjct 621 AGCACATCCGCACTAGAAAAAACCAACTTATGTACGAGTCCATCAATGAGCTCCAAAAAA 680
Query 496 AGGAGAATGAGATACAGGAGGAAAACAGCATGCTTACCAAACAGATAAAGGAGAGGGAAA 555
||||||| | ||||||||| |||||||||||||| | |||||||| |||||||||||||
Sbjct 681 AGGAGAAGGCCATACAGGAGCAAAACAGCATGCTTTCTAAACAGATCAAGGAGAGGGAAA 740
Query 556 ACATCCTAAGGACACAAAAA-ACCCAATGTGAGCAGCTGAACCGCAA--CCACGATGTAC 612
| || || ||| | ||| | | | | || || |||| ||||| || |||| || | |
Sbjct 741 AAATTCTTAGGGCTCAACAGGAGC-AGTGGGATCAGCAGAACC--AAGGCCACAATATGC 797
Query 613 CACCGCC---GCAACCGCAACCATTTC-AACACCCT-CATCCTTACATGATCTCTCATCA 667
| || || || |||||| | | | || | || |||||||||||| ||||||||||
Sbjct 798 CTCCCCCTCTGCCACCGCAGC-AGCACCAA-ATCCAGCATCCTTACATGCTCTCTCATCA 855
Query 668 GACTTCTCCTTTCCTAAATTTGGGTGG-CATGTACCAAGGAGAAGATCAAACGGCGATGA 726
| | |||||||| || || ||||||| | |||| |||| ||| |||| | ||| ||||
Sbjct 856 GCCATCTCCTTTTCTCAACATGGGTGGTC-TGTATCAAGAAGATGATCCTATGGCAATGA 914
Query 727 GGAGGAACAATCTGGATCTGACTCTTGAACCCATTTACAATT--A-CCTTGGCTG-TTAC 782
||||||| |||| || ||||||||||||||| ||||||| | | ||||||||| || |
Sbjct 915 GGAGGAATGATCTCGAACTGACTCTTGAACCCGTTTACAACTGCAACCTTGGCTGCTT-C 973
Query 783 GCCGCTTGAA 792
||||| ||||
Sbjct 974 GCCGCATGAA 983
> AT5G60910.1 | Symbols: AGL8, FUL | AGAMOUS-like 8 | chr5:24502482-24506143
REVERSE LENGTH=1113
Length=1113
Score = 174 bits (94), Expect = 1e-42
Identities = 180/220 (82%), Gaps = 12/220 (5%)
Strand=Plus/Plus
Query 16 GAGAAATGGGAAGGGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAG 75
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 126 GAGATATGGGAAGAGGTAGGGTTCAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAAG 185
Query 76 TGACATTCTCTAAA-AGAAGAG-CTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTC 132
| || ||||| ||| ||||| | ||||| || | ||||||||||| |||||||||||||
Sbjct 186 TTACTTTCTC-AAAGAGAAG-GTCTGGT-TTGCTCAAGAAAGCTCATGAGATCTCTGTTC 242
Query 133 TTTGTGATGCCGAGGTTTCCCTTATTGTCTTCTC--CCATAAGGGGAAATTGTTCGAGTA 190
| || ||||| |||||| | || || |||||||| ||| |||| ||| | ||||| ||
Sbjct 243 TCTGCGATGCTGAGGTTGCTCTCATCGTCTTCTCTTCCA-AAGGC-AAACTCTTCGAATA 300
Query 191 CACCTCTGAATCTTGCATGGAGAA-AGTACTCGAACGCTA 229
|| | || ||||||||||||| | |||| ||||||||
Sbjct 301 TTCCACCGACTCTTGCATGGAGAGGA-TACTTGAACGCTA 339
> AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein | chr1:8593642-8596098
REVERSE LENGTH=1140
Length=1140
Score = 122 bits (66), Expect = 4e-27
Identities = 142/177 (80%), Gaps = 12/177 (7%)
Strand=Plus/Plus
Query 19 AAATGGGAAG-GGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTG 77
|||||||||| ||| || || ||||||||||||||||||||||||||||||| ||||||
Sbjct 235 AAATGGGAAGAGGG-AGAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTG 293
Query 78 ACATTCT-CTAAA-AGAAG-AGCTGGTCTTTTGAAGAAAGC-TCAGGAGATCTCTGTTCT 133
|| || | | ||| ||||| | |||||||||||||||||| | | ||| | || |||||
Sbjct 294 ACGTT-TGC-AAAGAGAAGGAA-TGGTCTTTTGAAGAAAGCAT-ACGAGCTTTCAGTTCT 349
Query 134 TTGTGATGCCGAGGTTTCCCTTATTGTCTTCTCCCATAAGGGGAAAT-TGTTCGAGT 189
|||||||| || ||| | || || ||||||| ||| | ||||| ||| |||||
Sbjct 350 ATGTGATGCAGAAGTTGCTCTCATCATCTTCTCAAATA-GAGGAAAGCTGTACGAGT 405
> AT2G03710.1 | Symbols: SEP4, AGL3 | K-box region and MADS-box
transcription factor family protein | chr2:1129268-1131838
FORWARD LENGTH=1341
Length=1341
Score = 89.8 bits (48), Expect = 4e-17
Identities = 104/130 (80%), Gaps = 8/130 (6%)
Strand=Plus/Plus
Query 21 ATGGGAAG-GGGTAGGGTTCAATTGAAGAGGATAGAGAACAAGATCAATAGACAAGTGAC 79
|||||||| ||| | ||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 355 ATGGGAAGAGGG-AAAGTTGAGCTGAAGAGGATAGAGAACAAGATCAATAGACAAGTTAC 413
Query 80 ATTCT-CTAAA-AGAAGAGCTGGTCTTT-TGAAGAAAGCTCAGGAGATCTCTGTTCTTTG 136
|| | | ||| |||||| |||| || | ||||| ||| | ||| | ||||| |||||
Sbjct 414 TTT-TGC-AAAGAGAAGAAATGGT-TTGCTCAAGAAGGCTTATGAGCTTTCTGTCCTTTG 470
Query 137 TGATGCCGAG 146
|||||| |||
Sbjct 471 TGATGCTGAG 480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5