BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921636
Length=1660
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26230.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 1362 0.0
AT1G55490.1 | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1... 178 2e-43
> AT1G26230.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr1:9072256-9075307 REVERSE LENGTH=2003
Length=2003
Score = 1362 bits (737), Expect = 0.0
Identities = 889/958 (93%), Gaps = 28/958 (3%)
Strand=Plus/Plus
Query 1 CCTTGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CACTCTCTGCGTTGCCTTTTT 51
|||||||| |||||||||||||||| | | | || | ||||||||||||||| |||
Sbjct 16 CCTTGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTT 75
Query 52 CTGATCGAACTTTCCGTAAAAAG-------C--CTTC-T--TCTT---CGAATTTC-TTC 95
|||||||||||||||| |||||| | |||| | |||| |||||||| ||
Sbjct 76 CTGATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTT- 134
Query 96 CTTAGAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCGCTGTCACCAAG 155
|| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 135 CTGAGAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAG 194
Query 156 AAGCTTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAG 215
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 195 AAGCTTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAG 254
Query 216 GGACGAAACATAGTGTTGCAGAACAAGTACGGACCTCCCAAGATCGTCAATGATGGTGAA 275
||||||||| | |||||||||||||||||||| ||||| | ||| |||||||| ||||||
Sbjct 255 GGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACGGTGAA 314
Query 276 ACTGTTCTTAAAGAGATTGAATTGGAGGATCCTTTAGAGAATGTTGGAGTGAAACTTGTG 335
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 315 ACTGTTCTTAAAGAGATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTG 374
Query 336 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGTGATGGTTCCACTACATCTATAATT 395
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 375 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTATAATT 434
Query 396 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGGTTTCTGCTGGAACAAATCCCATC 455
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 435 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGATTTCTGCTGGAACAAATCCCATC 494
Query 456 CAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 515
||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 495 CAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 554
Query 516 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCCGGGAATGAC 575
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 555 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGAC 614
Query 576 TACGAAGTTGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 635
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 TACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 674
Query 636 ACAATAGAGAAAGGAAAATACCTAGTGAACAATCTTGAGATTGTCGAAGGAATGCAGTTT 695
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 675 ACAATAGAGAAAGGAAAATACCTTGTGAACAATCTCGAGATTGTGGAAGGAATGCAGTTT 734
Query 696 AATCGTGGTTATTTATCGCCTTACTTTGTCACTGACCGAAGGAAGAGGGAAGCTGAATTC 755
|||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 735 AATCGTGGCTACTTATCGCCATACTTTGTCACTGATCGAAGGAAGAGGGAAGCTGAATTC 794
Query 756 CATGATTGCAAGCTGCTTTTGGTTGATAAGAAAATAACAAATCCAAAAGACATGTTCAAG 815
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 795 CATGATTGCAAGCTGCTTTTGGTAGATAAGAAAATAACAAATCCAAAAGATATGTTCAAG 854
Query 816 ATATTGGATTCTGCTGTTAAAGAGGCCTTTCCAGTTCTTATAGTTGGCGAAGATATTGAG 875
||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 855 ATATTGGATTCTGCTGTTAAAGAGGAATTTCCAGTTCTAATAGTTGCCGAAGATATTGAG 914
Query 876 CAAGACGCTCTTGCTCCTGTTATTAGGAACCAACTAAAAGGTAATCTGA-GCGTGGCA 932
|||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||
Sbjct 915 CAAGACGCTCTTGCTCCTGTTATTAGGAACAAACTAAAAGGTAACCTGAAG-GTGGCA 971
Score = 1197 bits (648), Expect = 0.0
Identities = 688/708 (97%), Gaps = 0/708 (0%)
Strand=Plus/Plus
Query 933 AAAGCAGTCGAGGAAAGGGTTTCTCAGATCAAAAATCTTATCCAGAACACCGAGGAGAAT 992
||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||||||
Sbjct 1167 AAAGCAGTCGACGAAAGGGTTTCGCAGATTAAAAATCTTATCGAGAACACCGAGGAGAAT 1226
Query 993 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1286
Query 1053 CAGGTAGGTGCACAGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1112
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 CAGGTAGGTGCACTGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1346
Query 1113 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1406
Query 1173 TTGCAACTGGCTACAAAAGTGGACAGAATTAAAGACACCCTTGACAACACAGAACAGAAG 1232
|||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1407 TTGCGACTGGCTACAAAAGTGGACAGAATCAAAGAGACCCTTGACAACACAGAACAGAAG 1466
Query 1233 ATTGGAGCTGAAATATTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1292
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ATTGGAGCTGAAATCTTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1526
Query 1293 GCAGGCACAAATGGCAATATCGTCATAGAAAAGGTCTTATCCAACAAAAACGCCATGTAC 1352
|||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1527 GCAGACACAAATGGCAATATCGTCATAGAAAAGGTCTTATCGAACAAAAACACCATGTAC 1586
Query 1353 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGCTGGCTGGTATAATCGATCCA 1412
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1587 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGTTGGCTGGTATAATTGATCCA 1646
Query 1413 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTGCATCAGTAGCTCAAACGTTTCTGACA 1472
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1647 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTTCATCAGTGGCTCAAACGTTTCTGACA 1706
Query 1473 TCGGACTGCGTTATAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1532
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 TCGGATTGCGTTGTAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1766
Query 1533 TTGCCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTGCCAAGATTT 1592
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1767 TTACCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTACCAAGATTT 1826
Query 1593 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1640
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1874
> AT1G55490.1 | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715563-20719165
REVERSE LENGTH=2087
Length=2087
Score = 178 bits (96), Expect = 2e-43
Identities = 311/413 (75%), Gaps = 22/413 (5%)
Strand=Plus/Plus
Query 1101 GTTGAAGATGCCCTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGT 1160
||||||||||| || |||||||| ||| | || | || ||||| ||||| |||||||||
Sbjct 1478 GTTGAAGATGCTCTTAATGCAACAAAGGCCGCTGTCGAGGAAGGTATTGTTGTTGGTGGT 1537
Query 1161 GGTTGCGCCCT-CTTGCAACTGGCTACAAAAGTGGACAG-AATTAAAGACACCCTTGACA 1218
|||||| | || ||| | || ||| | || || || | ||||||| ||| ||||| |
Sbjct 1538 GGTTGCACTCTGCTT-CGTCTTGCTTCCAAGGTTGA-TGCCATTAAAGCCACGCTTGATA 1595
Query 1219 ACACA-GAACAGAAGATTGGAGCTGAAATA-TTCAAGAA-AGCATTGAGCTACCCCATAA 1275
| | ||| | ||| ||||||| || ||| || || || |||| | || |||||| |||
Sbjct 1596 A-TGATGAAGAAAAGGTTGGAGCGGATATAGTT-AA-AAGAGCACTAAGTTACCCCCTAA 1652
Query 1276 GACTTATAGCCAAAAACGCAGGCACAAATGGCAA-TATCGTCATAGAAAAGGT-CTTATC 1333
||| || ||||| || || || ||||| || | | || | || ||||| ||| ||
Sbjct 1653 AACTAATCGCCAAGAATGCTGGTGTTAATGG-AAGTGTAGTTAGCGAGAAGGTGCTT-TC 1710
Query 1334 CAACAAAAACGCCATGTACGGTTACAATGCTGCAAAGAATCAA-TATGAAGATCTGAT-G 1391
|||| | |||| | | ||||||||||||||| || ||| || || ||| |||| |
Sbjct 1711 CAACGATAACGTGAAATTCGGTTACAATGCTGC-AACCGGCAAGTACGAGGATTTGATGG 1769
Query 1392 CTGGCTGGTATAATCGATCCAACCAAGGTTGTGAGATGTTGCTTGGAACACGCTGCATCA 1451
|| || || || ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 1770 CT-GCAGGAATCATCGATCCAACAAAGGTTGTGAGATGTTGCTTGGAACACGCAGCTTCG 1828
Query 1452 GTAGCTCAA-ACGTTTCT-GACATCGGACTGCGTTATAGTTGAGATCAAAGAA 1502
|| || || || ||||| || |||||||||||| | ||||||||||| |||
Sbjct 1829 GTTGCA-AAGAC-TTTCTTGATGTCGGACTGCGTTGTTGTTGAGATCAAGGAA 1879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82027690530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5