BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921640
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26200.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensi... 1195 0.0
> AT1G26200.1 | Symbols: | TRAM, LAG1 and CLN8 (TLC) lipid-sensing
domain containing protein | chr1:9063471-9064914 REVERSE
LENGTH=939
Length=939
Score = 1195 bits (647), Expect = 0.0
Identities = 826/908 (91%), Gaps = 29/908 (3%)
Strand=Plus/Plus
Query 22 ATGGATCTGAAGCTCTTGAGTC-G--GGATTGGGATCATGAGTCTTACCCAGCTTCTTCT 78
||||||||||| |||||||||| | |||||||||||| || |||||||||| |||||||
Sbjct 1 ATGGATCTGAAACTCTTGAGTCGGCCGGATTGGGATCAAGAATCTTACCCAGATTCTTCT 60
Query 79 GATTTATGGGTCCTCATCTTCTTTGCTCTC-TTCTTCCTTTCTCTTCGCTTAATCCTCGA 137
||||| | |||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 61 GATTTCTTGGTCCTCATCTTCTTTGCTC-CATTCTTCCTTTTTCTTCGCTTAATCCTCGA 119
Query 138 CAGCTTCATATTCGAGAGGGTCGCTAGAAGACTGGTAGTTCCTAGAGGACACTACG-G-T 195
||| | |||||||||||||||||||||||||||||||||||||| ||| |||| | | |
Sbjct 120 CAGATGCATATTCGAGAGGGTCGCTAGAAGACTGGTAGTTCCTAAAGG--ACTATGTGCT 177
Query 196 GATTCAAACGAGAGAAGAAAGAAGATAGTGAAATTCAAAGAATCGGCTTGGAAATCTTTG 255
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 178 GATTCAAACGAGAGAAGAAAGAAGGTAGTGAAATTCAAAGAATCCGCTTGGAAATGTTTG 237
Query 256 TGCTCTTTCTCTGTTGAAGCTCTTGCTCTCTACGTCACCTATAAGGAGCCATGGTTTAAA 315
||||||||||| || |||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 238 TGCTCTTTCTCGGTGGAAGCTTTTGCTCTCTACGTTACTTATAAGGAGCCATGGTTTAAA 297
Query 316 GACACAAGATGCTTCTGGTT------A-G-GACCA-G---GG---GACC---AGATATGG 357
||||| |||| ||||||||| | | ||||| | || |||| ||||| |
Sbjct 298 GACACCAGATCCTTCTGGTTAGGACCAGGAGACCAGGTATGGCCTGACCAAAAGATAAAG 357
Query 358 TTGAAAATGAAGGGAATGTATATGTTTGTAGGAGGGTTGAATGTATATGCCttttttgct 417
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 358 TTGAAAATGAAGGGAATGTATATGTTTGTTGGCGGGTTAAATGTATATGCCTTTTTTGCT 417
Query 418 ttgtttttttGGGAAACAAGACGATCTGATTTTAAAGTCATGTTAGTTCATCACATTGTA 477
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 418 TTGTTCTTTTGGGAAACAAGACGATCTGATTTCAAAGTCATGTTAGTTCATCACATTGTA 477
Query 478 AATTCATTCCTCATCATCTTGTCTTACGTTTTCAGATTTGCTCGTATTGGTTCTGTAATA 537
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 ACTTCATTCCTCATCATCTTGTCTTACGTTTTCAGATTTGCTCGTATAGGTTCTGTAATA 537
Query 538 TT-GTCTCTCCACGAAATCAGCGACGTGTTTCTAGAGATAGGCAAGATGTGCAAATACAG 596
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTAG-CTCTTCACGAAATCAGCGACGTGTTTCTAGAGATAGGCAAGATGTGCAAATACAG 596
Query 597 CGGCGCAGAAGCCATGACTAGTGTCTCCTTTGTCCTATTCTTCTTGTCGTGGACCGCGTT 656
|||||| ||| | |||||||| ||||| ||||||||||| ||||||||||||||| | ||
Sbjct 597 CGGCGCCGAAACTATGACTAGCGTCTCGTTTGTCCTATTTTTCTTGTCGTGGACCACTTT 656
Query 657 GAGACTCATCTATTACCCTTTCTGGATCTTATGGAGCACCAGCTACGAATCAATAAAAGT 716
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 657 GCGACTCATCTATTACCCTTTCTGGATCCTATGGAGCACCAGCTACGAATCAATAAAAGT 716
Query 717 GAAAATGGAGTACTGGGACAAGAAGCATTTGATGGACACTGGACCAAACCTTATGGTCTT 776
||||| |||||||||||||||||||||| ||||||| || |||||| |||||| | ||
Sbjct 717 GAAAACGGAGTACTGGGACAAGAAGCATCTGATGGAAACCGGACCACCCCTTATACTTTT 776
Query 777 CTACTATGTCTTCAACACACTTCTTTATTGCTTACAGATTCTTCACATCTACTGGTGGAT 836
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 CTACTATGTCTTCAACACACTTCTTTATTGCTTACAGATTCTGCACATCTACTGGTGGAT 836
Query 837 CTTGATATATCGTGTGCTCATAAGCCAAATTCGTGCCAAAGGCACAGTCGCTAAAGACAT 896
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 837 CTTGATATATCGTGTGCTCATAAGCCAAATACGTGCCAAAGGCAAAGTCGCTAAAGACAT 896
Query 897 TCGTTCTG 904
||||||||
Sbjct 897 TCGTTCTG 904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5