BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921649
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25150.1 | Symbols: | F-box family protein | chr1:8821008-8... 363 3e-99
AT1G25055.1 | Symbols: | F-box family protein | chr1:8806607-8... 363 3e-99
AT1G24881.1 | Symbols: | F-box family protein | chr1:8784036-8... 363 3e-99
AT1G24800.1 | Symbols: | F-box family protein | chr1:8769660-8... 363 3e-99
AT1G25211.1 | Symbols: | F-box family protein | chr1:8835386-8... 357 1e-97
AT5G28527.1 | Symbols: | pseudogene, hypothetical protein | ch... 75.0 2e-12
> AT1G25150.1 | Symbols: | F-box family protein | chr1:8821008-8822533
FORWARD LENGTH=1526
Length=1526
Score = 363 bits (196), Expect = 3e-99
Identities = 499/636 (78%), Gaps = 57/636 (9%)
Strand=Plus/Plus
Query 33 TGCGATCTTCCACCGGAA-TTGGTA-GGGA-AA-ATATTCACCAAGATTCCGATAACATC 88
|||||||||||||| ||| ||||| |||| || || |||| | |||||||||||||||
Sbjct 95 TGCGATCTTCCACC-GAAGCTGGTAGGGGAGAAGATCCTCACGAGGATTCCGATAACATC 153
Query 89 TCTGAGAACAGTTCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGAAT-GGGTTT 147
||||||| | || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 154 TCTGAGAGCGGTGCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGA-TCGGGTTC 212
Query 148 TGGGCAAAGCAGTGGCAAGGCAGCCGTGTGCGGGGTTCATGACTA-GGTATTCTAGGGTT 206
|||| ||||||| ||| | ||| | || ||| || ||||| | || |||| | |||
Sbjct 213 TGGGTAAAGCAGCGGC--G-CAGTTTT-TG-GGGTTT-ATGACGATGG-ATTCAAAGGTC 265
Query 207 TTGT-CAGTAAGATTTGATCTCCAAGGAATCC-GCAA-AACCGATGGCGAGCTGG-TGGA 262
| || |||| ||||| |||||| | | | | | || || | || | | ||||
Sbjct 266 T-GTTCAGTTAGATTCCATCTCCGTCGCAGCAAGGAGGAA--GAAGAAGA-CACGATGGA 321
Query 263 TCCATCTAGAAAGCAGTTAGATGTATTTAATCAAGTCGAGATAAT-TAAAGTCTTTCACT 321
|| ||||| ||||||| ||||| | ||||||||||||||||| | || ||| | |||||
Sbjct 322 TCTATCTATAAAGCAGGTAGATTTGCTTAATCAAGTCGAGATA-TCTAGAGTGTATCACT 380
Query 322 GCCACGGCTTATTGTTATGCATC-CTCAAGGACAAGTCGAGGCTCGTGGTGTGGAACCCT 380
|| ||||||| ||||||||| | || |||||||| |||||| ||||||| |||||||||
Sbjct 381 GCGACGGCTTGTTGTTATGCGTGGCT-AAGGACAACTCGAGGGTCGTGGTTTGGAACCCT 439
Query 381 TATTTGGGGCAAACAAGGA-GGATTAGACCGAGAACAGATTTTCA-CAGAC-ACGACAGA 437
||||||||||||||||| | |||| ||||| |||||||| | || || | | |||||
Sbjct 440 TATTTGGGGCAAACAAG-ATGGATCAGACCCAGAACAGAATC-CAACATAGGA-GACAGC 496
Query 438 TATGCTCTCGGATACGACATCAATCATAACCACAAAATCTTGAGGTTTTTGGATG-ATGA 496
|||||||| |||||||||||||| | ||||||||||||||||||| | || || | ||
Sbjct 497 TATGCTCTTGGATACGACATCAACCGTAACCACAAAATCTTGAGGAT---GG-TGCA-GA 551
Query 497 CCATAAAAACCTT-C--TTGA--G-TACGAAATCTACGACTTGAGCTCTAAGTCATGGAG 550
| | | |||| || | || | | |||||||||||||||||| ||||||| ||||||||
Sbjct 552 C-A-AGAAACGTTTCCGTTTACAGGTACGAAATCTACGACTTGCGCTCTAATTCATGGAG 609
Query 551 GGTTCTCAAGATCACTCCCGACTGGTA--TGTAAATT--TCAATCACCGC---GGCGTGT 603
||||||| || |||||||| || || | || | | ||| || || | ||||| |
Sbjct 610 GGTTCTCGAGGTCACTCCCAACGGGGAAATGGACCCTAATCA-TCCCCTCTACGGCGTTT 668
Query 604 CTGTGAATGGAAATACCTACTTTTTTG-GTCATGAG 638
||||||| ||||||||||||||||||| | ||||||
Sbjct 669 CTGTGAAGGGAAATACCTACTTTTTTGCG-CATGAG 703
> AT1G25055.1 | Symbols: | F-box family protein | chr1:8806607-8808156
FORWARD LENGTH=1550
Length=1550
Score = 363 bits (196), Expect = 3e-99
Identities = 499/636 (78%), Gaps = 57/636 (9%)
Strand=Plus/Plus
Query 33 TGCGATCTTCCACCGGAA-TTGGTA-GGGA-AA-ATATTCACCAAGATTCCGATAACATC 88
|||||||||||||| ||| ||||| |||| || || |||| | |||||||||||||||
Sbjct 118 TGCGATCTTCCACC-GAAGCTGGTAGGGGAGAAGATCCTCACGAGGATTCCGATAACATC 176
Query 89 TCTGAGAACAGTTCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGAAT-GGGTTT 147
||||||| | || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 177 TCTGAGAGCGGTGCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGA-TCGGGTTC 235
Query 148 TGGGCAAAGCAGTGGCAAGGCAGCCGTGTGCGGGGTTCATGACTA-GGTATTCTAGGGTT 206
|||| ||||||| ||| | ||| | || ||| || ||||| | || |||| | |||
Sbjct 236 TGGGTAAAGCAGCGGC--G-CAGTTTT-TG-GGGTTT-ATGACGATGG-ATTCAAAGGTC 288
Query 207 TTGT-CAGTAAGATTTGATCTCCAAGGAATCC-GCAA-AACCGATGGCGAGCTGG-TGGA 262
| || |||| ||||| |||||| | | | | | || || | || | | ||||
Sbjct 289 T-GTTCAGTTAGATTCCATCTCCGTCGCAGCAAGGAGGAA--GAAGAAGA-CACGATGGA 344
Query 263 TCCATCTAGAAAGCAGTTAGATGTATTTAATCAAGTCGAGATAAT-TAAAGTCTTTCACT 321
|| ||||| ||||||| ||||| | ||||||||||||||||| | || ||| | |||||
Sbjct 345 TCTATCTATAAAGCAGGTAGATTTGCTTAATCAAGTCGAGATA-TCTAGAGTGTATCACT 403
Query 322 GCCACGGCTTATTGTTATGCATC-CTCAAGGACAAGTCGAGGCTCGTGGTGTGGAACCCT 380
|| ||||||| ||||||||| | || |||||||| |||||| ||||||| |||||||||
Sbjct 404 GCGACGGCTTGTTGTTATGCGTGGCT-AAGGACAACTCGAGGGTCGTGGTTTGGAACCCT 462
Query 381 TATTTGGGGCAAACAAGGA-GGATTAGACCGAGAACAGATTTTCA-CAGAC-ACGACAGA 437
||||||||||||||||| | |||| ||||| |||||||| | || || | | |||||
Sbjct 463 TATTTGGGGCAAACAAG-ATGGATCAGACCCAGAACAGAATC-CAACATAGGA-GACAGC 519
Query 438 TATGCTCTCGGATACGACATCAATCATAACCACAAAATCTTGAGGTTTTTGGATG-ATGA 496
|||||||| |||||||||||||| | ||||||||||||||||||| | || || | ||
Sbjct 520 TATGCTCTTGGATACGACATCAACCGTAACCACAAAATCTTGAGGAT---GG-TGCA-GA 574
Query 497 CCATAAAAACCTT-C--TTGA--G-TACGAAATCTACGACTTGAGCTCTAAGTCATGGAG 550
| | | |||| || | || | | |||||||||||||||||| ||||||| ||||||||
Sbjct 575 C-A-AGAAACGTTTCCGTTTACAGGTACGAAATCTACGACTTGCGCTCTAATTCATGGAG 632
Query 551 GGTTCTCAAGATCACTCCCGACTGGTA--TGTAAATT--TCAATCACCGC---GGCGTGT 603
||||||| || |||||||| || || | || | | ||| || || | ||||| |
Sbjct 633 GGTTCTCGAGGTCACTCCCAACGGGGAAATGGACCCTAATCA-TCCCCTCTACGGCGTTT 691
Query 604 CTGTGAATGGAAATACCTACTTTTTTG-GTCATGAG 638
||||||| ||||||||||||||||||| | ||||||
Sbjct 692 CTGTGAAGGGAAATACCTACTTTTTTGCG-CATGAG 726
> AT1G24881.1 | Symbols: | F-box family protein | chr1:8784036-8785634
FORWARD LENGTH=1599
Length=1599
Score = 363 bits (196), Expect = 3e-99
Identities = 499/636 (78%), Gaps = 57/636 (9%)
Strand=Plus/Plus
Query 33 TGCGATCTTCCACCGGAA-TTGGTA-GGGA-AA-ATATTCACCAAGATTCCGATAACATC 88
|||||||||||||| ||| ||||| |||| || || |||| | |||||||||||||||
Sbjct 160 TGCGATCTTCCACC-GAAGCTGGTAGGGGAGAAGATCCTCACGAGGATTCCGATAACATC 218
Query 89 TCTGAGAACAGTTCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGAAT-GGGTTT 147
||||||| | || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 219 TCTGAGAGCGGTGCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGA-TCGGGTTC 277
Query 148 TGGGCAAAGCAGTGGCAAGGCAGCCGTGTGCGGGGTTCATGACTA-GGTATTCTAGGGTT 206
|||| ||||||| ||| | ||| | || ||| || ||||| | || |||| | |||
Sbjct 278 TGGGTAAAGCAGCGGC--G-CAGTTTT-TG-GGGTTT-ATGACGATGG-ATTCAAAGGTC 330
Query 207 TTGT-CAGTAAGATTTGATCTCCAAGGAATCC-GCAA-AACCGATGGCGAGCTGG-TGGA 262
| || |||| ||||| |||||| | | | | | || || | || | | ||||
Sbjct 331 T-GTTCAGTTAGATTCCATCTCCGTCGCAGCAAGGAGGAA--GAAGAAGA-CACGATGGA 386
Query 263 TCCATCTAGAAAGCAGTTAGATGTATTTAATCAAGTCGAGATAAT-TAAAGTCTTTCACT 321
|| ||||| ||||||| ||||| | ||||||||||||||||| | || ||| | |||||
Sbjct 387 TCTATCTATAAAGCAGGTAGATTTGCTTAATCAAGTCGAGATA-TCTAGAGTGTATCACT 445
Query 322 GCCACGGCTTATTGTTATGCATC-CTCAAGGACAAGTCGAGGCTCGTGGTGTGGAACCCT 380
|| ||||||| ||||||||| | || |||||||| |||||| ||||||| |||||||||
Sbjct 446 GCGACGGCTTGTTGTTATGCGTGGCT-AAGGACAACTCGAGGGTCGTGGTTTGGAACCCT 504
Query 381 TATTTGGGGCAAACAAGGA-GGATTAGACCGAGAACAGATTTTCA-CAGAC-ACGACAGA 437
||||||||||||||||| | |||| ||||| |||||||| | || || | | |||||
Sbjct 505 TATTTGGGGCAAACAAG-ATGGATCAGACCCAGAACAGAATC-CAACATAGGA-GACAGC 561
Query 438 TATGCTCTCGGATACGACATCAATCATAACCACAAAATCTTGAGGTTTTTGGATG-ATGA 496
|||||||| |||||||||||||| | ||||||||||||||||||| | || || | ||
Sbjct 562 TATGCTCTTGGATACGACATCAACCGTAACCACAAAATCTTGAGGAT---GG-TGCA-GA 616
Query 497 CCATAAAAACCTT-C--TTGA--G-TACGAAATCTACGACTTGAGCTCTAAGTCATGGAG 550
| | | |||| || | || | | |||||||||||||||||| ||||||| ||||||||
Sbjct 617 C-A-AGAAACGTTTCCGTTTACAGGTACGAAATCTACGACTTGCGCTCTAATTCATGGAG 674
Query 551 GGTTCTCAAGATCACTCCCGACTGGTA--TGTAAATT--TCAATCACCGC---GGCGTGT 603
||||||| || |||||||| || || | || | | ||| || || | ||||| |
Sbjct 675 GGTTCTCGAGGTCACTCCCAACGGGGAAATGGACCCTAATCA-TCCCCTCTACGGCGTTT 733
Query 604 CTGTGAATGGAAATACCTACTTTTTTG-GTCATGAG 638
||||||| ||||||||||||||||||| | ||||||
Sbjct 734 CTGTGAAGGGAAATACCTACTTTTTTGCG-CATGAG 768
> AT1G24800.1 | Symbols: | F-box family protein | chr1:8769660-8771251
FORWARD LENGTH=1592
Length=1592
Score = 363 bits (196), Expect = 3e-99
Identities = 499/636 (78%), Gaps = 57/636 (9%)
Strand=Plus/Plus
Query 33 TGCGATCTTCCACCGGAA-TTGGTA-GGGA-AA-ATATTCACCAAGATTCCGATAACATC 88
|||||||||||||| ||| ||||| |||| || || |||| | |||||||||||||||
Sbjct 157 TGCGATCTTCCACC-GAAGCTGGTAGGGGAGAAGATCCTCACGAGGATTCCGATAACATC 215
Query 89 TCTGAGAACAGTTCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGAAT-GGGTTT 147
||||||| | || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 216 TCTGAGAGCGGTGCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGA-TCGGGTTC 274
Query 148 TGGGCAAAGCAGTGGCAAGGCAGCCGTGTGCGGGGTTCATGACTA-GGTATTCTAGGGTT 206
|||| ||||||| ||| | ||| | || ||| || ||||| | || |||| | |||
Sbjct 275 TGGGTAAAGCAGCGGC--G-CAGTTTT-TG-GGGTTT-ATGACGATGG-ATTCAAAGGTC 327
Query 207 TTGT-CAGTAAGATTTGATCTCCAAGGAATCC-GCAA-AACCGATGGCGAGCTGG-TGGA 262
| || |||| ||||| |||||| | | | | | || || | || | | ||||
Sbjct 328 T-GTTCAGTTAGATTCCATCTCCGTCGCAGCAAGGAGGAA--GAAGAAGA-CACGATGGA 383
Query 263 TCCATCTAGAAAGCAGTTAGATGTATTTAATCAAGTCGAGATAAT-TAAAGTCTTTCACT 321
|| ||||| ||||||| ||||| | ||||||||||||||||| | || ||| | |||||
Sbjct 384 TCTATCTATAAAGCAGGTAGATTTGCTTAATCAAGTCGAGATA-TCTAGAGTGTATCACT 442
Query 322 GCCACGGCTTATTGTTATGCATC-CTCAAGGACAAGTCGAGGCTCGTGGTGTGGAACCCT 380
|| ||||||| ||||||||| | || |||||||| |||||| ||||||| |||||||||
Sbjct 443 GCGACGGCTTGTTGTTATGCGTGGCT-AAGGACAACTCGAGGGTCGTGGTTTGGAACCCT 501
Query 381 TATTTGGGGCAAACAAGGA-GGATTAGACCGAGAACAGATTTTCA-CAGAC-ACGACAGA 437
||||||||||||||||| | |||| ||||| |||||||| | || || | | |||||
Sbjct 502 TATTTGGGGCAAACAAG-ATGGATCAGACCCAGAACAGAATC-CAACATAGGA-GACAGC 558
Query 438 TATGCTCTCGGATACGACATCAATCATAACCACAAAATCTTGAGGTTTTTGGATG-ATGA 496
|||||||| |||||||||||||| | ||||||||||||||||||| | || || | ||
Sbjct 559 TATGCTCTTGGATACGACATCAACCGTAACCACAAAATCTTGAGGAT---GG-TGCA-GA 613
Query 497 CCATAAAAACCTT-C--TTGA--G-TACGAAATCTACGACTTGAGCTCTAAGTCATGGAG 550
| | | |||| || | || | | |||||||||||||||||| ||||||| ||||||||
Sbjct 614 C-A-AGAAACGTTTCCGTTTACAGGTACGAAATCTACGACTTGCGCTCTAATTCATGGAG 671
Query 551 GGTTCTCAAGATCACTCCCGACTGGTA--TGTAAATT--TCAATCACCGC---GGCGTGT 603
||||||| || |||||||| || || | || | | ||| || || | ||||| |
Sbjct 672 GGTTCTCGAGGTCACTCCCAACGGGGAAATGGACCCTAATCA-TCCCCTCTACGGCGTTT 730
Query 604 CTGTGAATGGAAATACCTACTTTTTTG-GTCATGAG 638
||||||| ||||||||||||||||||| | ||||||
Sbjct 731 CTGTGAAGGGAAATACCTACTTTTTTGCG-CATGAG 765
> AT1G25211.1 | Symbols: | F-box family protein | chr1:8835386-8837007
FORWARD LENGTH=1622
Length=1622
Score = 357 bits (193), Expect = 1e-97
Identities = 498/636 (78%), Gaps = 57/636 (9%)
Strand=Plus/Plus
Query 33 TGCGATCTTCCACCGGAA-TTGGTA-GGGA-AA-ATATTCACCAAGATTCCGATAACATC 88
|||||||||||||| ||| ||||| |||| || || |||| | |||||||||||||||
Sbjct 95 TGCGATCTTCCACC-GAAGCTGGTAGGGGAGAAGATCCTCACGAGGATTCCGATAACATC 153
Query 89 TCTGAGAACAGTTCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGAAT-GGGTTT 147
||||||| | || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 154 TCTGAGAGCGGTGCGATCCACTTGCAAATTATGGAACGCTTTAACCAAAGA-TCGGGTTC 212
Query 148 TGGGCAAAGCAGTGGCAAGGCAGCCGTGTGCGGGGTTCATGACTA-GGTATTCTAGGGTT 206
|||| ||||||| ||| | ||| | || ||| || ||||| | || |||| | |||
Sbjct 213 TGGGTAAAGCAGCGGC--G-CAGTTTT-TG-GGGTTT-ATGACGATGG-ATTCAAAGGTC 265
Query 207 TTGT-CAGTAAGATTTGATCTCCAAGGAATCC-GCAA-AACCGATGGCGAGCTGG-TGGA 262
| || |||| ||||| |||||| | | | | | || || | || | | ||||
Sbjct 266 T-GTTCAGTTAGATTCCATCTCCGTCGCAGCAAGGAGGAA--GAAGAAGA-CACGATGGA 321
Query 263 TCCATCTAGAAAGCAGTTAGATGTATTTAATCAAGTCGAGATAAT-TAAAGTCTTTCACT 321
|| ||||| ||||||| ||||| | ||||||||||||||||| | || || | |||||
Sbjct 322 TCTATCTATAAAGCAGGTAGATTTGCTTAATCAAGTCGAGATA-TCTAGGGTGTATCACT 380
Query 322 GCCACGGCTTATTGTTATGCATC-CTCAAGGACAAGTCGAGGCTCGTGGTGTGGAACCCT 380
|| ||||||| ||||||||| | || |||||||| |||||| ||||||| |||||||||
Sbjct 381 GCGACGGCTTGTTGTTATGCGTGGCT-AAGGACAACTCGAGGGTCGTGGTTTGGAACCCT 439
Query 381 TATTTGGGGCAAACAAGGA-GGATTAGACCGAGAACAGATTTTCA-CAGAC-ACGACAGA 437
||||||||||||||||| | |||| ||||| |||||||| | || || | | |||||
Sbjct 440 TATTTGGGGCAAACAAG-ATGGATCAGACCCAGAACAGAATC-CAACATAGGA-GACAGC 496
Query 438 TATGCTCTCGGATACGACATCAATCATAACCACAAAATCTTGAGGTTTTTGGATG-ATGA 496
|||||||| |||||||||||||| | ||||||||||||||||||| | || || | ||
Sbjct 497 TATGCTCTTGGATACGACATCAACCGTAACCACAAAATCTTGAGGAT---GG-TGCA-GA 551
Query 497 CCATAAAAACCTT-C--TTGA--G-TACGAAATCTACGACTTGAGCTCTAAGTCATGGAG 550
| | | |||| || | || | | |||||||||||||||||| ||||||| ||||||||
Sbjct 552 C-A-AGAAACGTTTCCGTTTACAGGTACGAAATCTACGACTTGCGCTCTAATTCATGGAG 609
Query 551 GGTTCTCAAGATCACTCCCGACTGGTA--TGTAAATT--TCAATCACCGC---GGCGTGT 603
||||||| || |||||||| || || | || | | ||| || || | ||||| |
Sbjct 610 GGTTCTCGAGGTCACTCCCAACGGGGAAATGGACCCTAATCA-TCCCCTCTACGGCGTTT 668
Query 604 CTGTGAATGGAAATACCTACTTTTTTG-GTCATGAG 638
||||||| ||||||||||||||||||| | ||||||
Sbjct 669 CTGTGAAGGGAAATACCTACTTTTTTGCG-CATGAG 703
> AT5G28527.1 | Symbols: | pseudogene, hypothetical protein |
chr5:10513366-10514577 FORWARD LENGTH=1212
Length=1212
Score = 75.0 bits (40), Expect = 2e-12
Identities = 93/118 (79%), Gaps = 5/118 (4%)
Strand=Plus/Plus
Query 662 TTTCTTACTTTGTTTTGATTTCACAAAAGAGAGATTTGGACCGCGGCTGCCTCTTCCGTC 721
||||||| | ||||||||||||||||||||||||||||| |||| ||||||| ||||
Sbjct 745 TTTCTTAGTATGTTTTGATTTCACAAAAGAGAGATTTGGGCCGCTTTTGCCTCTACCGTT 804
Query 722 TGGAGAACCTTATAATGAAGATACTGTGACCCTCTC-ATGTGTTAGAGAAGAACAGCT 778
|| || | || ||||||||| | || || || | |||||||||| || |||||
Sbjct 805 TG-AGTGG-T-ATCCTGAAGATACCGCCACTCTATCTA-GTGTTAGAGAGGAGCAGCT 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61094063265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5