BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921658
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25580.1 | Symbols: SOG1, ANAC008 | NAC (No Apical Meristem)... 2073 0.0
> AT1G25580.1 | Symbols: SOG1, ANAC008 | NAC (No Apical Meristem)
domain transcriptional regulator superfamily protein | chr1:8996768-8999860
REVERSE LENGTH=1906
Length=1906
Score = 2073 bits (1122), Expect = 0.0
Identities = 1329/1424 (93%), Gaps = 34/1424 (2%)
Strand=Plus/Plus
Query 1 TCTTTACTTCATCGAGCTCTAATGGCTGGACGATCATGGCTGATCGATAGCAACCGGATT 60
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 TCTTTTCTTCATCGAGCTCTAATGGCTGGGCGATCATGGCTGATCGATAGCAACCGGATT 299
Query 61 GCAACAAAGATTATGAGTGCATCGGCTAGTTCCGACCCGCGCCAAGTGGTGTGGAAGAGC 120
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 300 GCAACGAAGATTATGAGTGCATCGGCTAGTTCCGATCCTCGCCAAGTGGTGTGGAAGAGC 359
Query 121 AATCC-TACAAGACATTGTCCCAACTGTCAACACGTCATTGACAACAGTGATGTTGTTGA 179
|| || | |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 360 AACCCGT-CAAGACATTGTCCCAAGTGTCAACATGTCATTGACAACAGTGATGTTGTTGA 418
Query 180 TGATTGGCCGGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCAGAGATCATATG 239
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 419 TGATTGGCCAGGATTGCCTCGAGGTGTGAAATTTGATCCATCTGATCCTGAGATCATATG 478
Query 240 GCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGTTCCCACCCTTTCATTGATGAGTT 299
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 479 GCATTTGCTAGCCAAATCTGGTTTGTCAGGGTTAAGCTCACACCCTTTCATTGATGAGTT 538
Query 300 CATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTGCCAGG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 CATCCCAACCGTCAATCAAGATGATGGAATCTGTTACACTCATCCTAAGAATTTACCAGG 598
Query 360 TGTTAAGAACGATGGAACGGTGTCCCACTTCTTCCATAAAGCAATCAAAGCTTATAGCAC 419
|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 599 TGTTAAGAGTGATGGGACGGTGTCTCACTTCTTCCATAAAGCAATCAAAGCTTATAGCAC 658
Query 420 AGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGAACTCGAAAGCGTAGAAAGATTCACGACGATGATTTTGGCGATGTGCGCTGGCATAA 718
Query 480 GACAGGAAAAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAAATTAT 539
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 719 GACAGGAAGAACGAAACCGGTTGTGTTGGATGGTGTTCAAAGAGGTTGCAAGAAGATAAT 778
Query 540 GGTTCTCTATGCCGGAAAAGCTGTGAAAACGAACTGGGTGATGCACCAATATCACTTGGG 599
||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 779 GGTTCTCTATGGCGGAAAAGCTGTGAAAACCAACTGGGTGATGCACCAATACCATTTGGG 838
Query 600 AATTGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATATTCTACCAGCAGCC 659
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 AATAGAAGAAGACGAGAAGGAAGGTGATTATGTTGTTTCTAAGATTTTCTACCAGCAGCC 898
Query 660 ACAGCAGCTAGTAGTCAAGCAAGGTGATAAAGTTGACCAGGATGTCTCTGAGGATATCTT 719
||| |||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||
Sbjct 899 ACAACAGCTAGTAGTCAAGCGAGGTGATAAAGCTGAACAGGAAGTCTCTGAGGATATCTT 958
Query 720 TGCTGCAATGACTCCAAAAGCGGATCCTGTCACTCCAAAATTAGCCACACCTGAGCCTCG 779
||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 959 TGCTGCAGTGACTCCAACAGCGGATCCTGTCACTCCAAAATTAGCTACACCTGAGCCTCG 1018
Query 780 ACATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCCCA-TG 838
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1019 AAATGCTGTGCGAATTTGCTCTGATTCTCACATTGCCAGTGACTATGTTACTCCC-AGTG 1077
Query 839 ACTATGTAACTGCCCATGAGGTTTCTCTTGCCGAGACATCTGAGGTAATGTATATGGAAG 898
|||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1078 ACTATGTATCTGCCCATGAGGTTTCTCTTGCCGAGACATCCGAGGTAATGTGTATGGAAG 1137
Query 899 ATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACTAAGTTCTGAATATGAGCCTGAGC 958
|||||||||||||||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 1138 ATGAGGTTCAGAGTATTCAACCTAATCATGAAAGACCAAGTTCTG-----G-GCCTGAGC 1191
Query 959 CTGATCCTGAGCCCGAGCCCGAGCCCGGACTTGAAAACGGAGCAAAAGAAATGATAGATG 1018
|| |||| | | | | ||||||||||||||||||||||||| ||||||
Sbjct 1192 -TG-----GAGC---A-C--G-G-----ACTTGAAAACGGAGCAAAAGAAATGTTAGATG 1233
Query 1019 ATAAAGAGGAGCAAGAGAAGGATAGAGACGATGAAAACCAAGCTGAGGAAGAGCCGATTT 1078
||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| |
Sbjct 1234 ATAAAGAGGAGCAAGAGAAGGATAGAGACAATGAAAACCAAGGTGAGGAAGATCCGACGT 1293
Query 1079 GGTTTGACAATGAATCTCAGTTTGTCTTGAACTCACAACAGCTTGTGGAAGCCTTGTCTC 1138
||||||||| || |||||||||| ||||||| || |||||||||||||||||||||||||
Sbjct 1294 GGTTTGACAGTGGATCTCAGTTTATCTTGAATTCGCAACAGCTTGTGGAAGCCTTGTCTC 1353
Query 1139 TTTGCGATGATCTCTTGCAAGTGGGATCACAGGACAGGGAAGAAAACACAAACAGTGGAA 1198
||||||| ||||||||| | | ||||||||||||||| |||||||||||||||||||
Sbjct 1354 TTTGCGACGATCTCTTG---G-G--ATCACAGGACAGGGAGGAAAACACAAACAGTGGAA 1407
Query 1199 GCTTAAAGAATAAACAACCATGTTTTGCGGATTACGCACAGCTAGGAACAGAAGACTTCA 1258
|||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 1408 GCTTAAAGGATAAACAACCATGTATTGCGGATTACGCACACCTAGGACCAGAAGACTTCA 1467
Query 1259 AACGGGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCCAACATAGAGCTTGATA 1318
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1468 AACGTGATCTGGAGGAATGTCAGAAAATCGTTCTTGATCCCTCTAACATAGAGCTTGATA 1527
Query 1319 CTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCGT 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1528 CTCCACCTGAGTTTCGTCTGAGCCAGCTGGAATTTGGATCACAGGACAGCTTTCTCGCTT 1587
Query 1379 GGGGCACTGGAAAGACTGACTGACTAAACAAAACTACCACGAGC 1422
|||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1588 GGGGGACTGGAAAGACTGATTGACTAAACAAAACTACCACGAGC 1631
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5