BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921665
Length=1501
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25510.1 | Symbols: | Eukaryotic aspartyl protease family p... 2182 0.0
> AT1G25510.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:8959186-8960848 REVERSE LENGTH=1663
Length=1663
Score = 2182 bits (1181), Expect = 0.0
Identities = 1390/1491 (93%), Gaps = 13/1491 (1%)
Strand=Plus/Plus
Query 1 TAACGGTCGGAAACTAAAAAATGtctcctcctcactgctccttcctcttcttcttcgtct 60
|||||||||||| |||||||||| | ||||| ||| |||| | ||||||||||| |||
Sbjct 6 TAACGGTCGGAATCTAAAAAATG--T-CTCCTAACTACTCC-T--TCTTCTTCTTCATCT 59
Query 61 tcttcctcacttcacactcttttgttttctccAGAATCTTACCAAAGACCTCTGTAACCA 120
||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||
Sbjct 60 TCTTCCTCACTTCACACTCTTCTGTTTTCTCCAGAATCTTACCAGAGACCTCCACAACCA 119
Query 121 CTACCTCAATTCTCAATGTCGCCGACTCCATTCACGGAACTAAGTATACGTCGTCGTTTC 180
|||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||
Sbjct 120 CTACCTCAATTCTCAATGTCGCTGACTCCATCCACAGAACCAAGTATACGTCGTCGTTTC 179
Query 181 GATTAAACCAGCAAGAAGAACAGACTCACTCTCG-TTCTTCCTCTTTCAGCTTGCAGCTT 239
| |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct 180 GGTTAAACCAGCAAGAAGAACAGACTCACTCT-GCTTCTTCTTCTTTCAGCTTGCAGCTT 238
Query 240 CATTCACGAGTTTCCGTCCGTGGAACTGAACACTCAGATTACAAGTCTCTAACACTAGCC 299
|||||||||||||||||||| ||||||||||||||||| || ||||| || |||||||||
Sbjct 239 CATTCACGAGTTTCCGTCCGAGGAACTGAACACTCAGACTATAAGTCACTCACACTAGCC 298
Query 300 AGACTCAACCGTGACACAGCCCGAGTCAAGTCTCTCATAACTCGTTTAGATCTAGCCATC 359
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 299 AGACTCAACCGTGACACAGCCCGAGTCAAATCTCTCATAACCCGTTTAGATCTAGCCATC 358
Query 360 AACAACATATCCAAAGCGGATCTC-AAGCCAGTTACCACAATGTACACTACTACTGAGGA 418
||||||||||||||||| |||||| || ||| | | |||||||||||| | ||||||||
Sbjct 359 AACAACATATCCAAAGCAGATCTCAAACCCA-TCAGCACAATGTACAC--C-ACTGAGGA 414
Query 419 GGAAGATATCGAAGCTCCTTTAATCTCCGGCACGACTCAAGGAAGCGGCGAGTACTTCAC 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 415 ACAAGATATCGAAGCTCCTTTAATCTCCGGCACGACTCAAGGAAGTGGCGAGTACTTCAC 474
Query 479 ACGCGTCGGTATCGGAAACCCGGCGCGTGAAGTCTACATGGTTCTCGATACTGGAAGTGA 538
|||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 475 ACGCGTCGGTATCGGAAAACCGGCGCGTGAAGTTTATATGGTTCTAGATACTGGAAGTGA 534
Query 539 CGTTAACTGGCTACAATGCACTCCTTGCGCTGATTGTTACCACCAAACCGAACCAATCTT 598
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 535 CGTGAACTGGCTACAATGTACTCCTTGCGCTGACTGTTACCACCAAACCGAACCAATCTT 594
Query 599 CGAGCCATCGTCGTCCTCTTCTTACGAGCCTCTCTCTTGTGACACTCCACAGTGTAATGC 658
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 595 CGAGCCATCGTCGTCTTCTTCTTACGAGCCTCTCTCTTGTGACACTCCACAGTGCAATGC 654
Query 659 CCTTGAAGTCTCAGAATGTAGAAACGCCACGTGTCTTTATGAGGTTTCCTACGGTGACGG 718
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 655 CCTTGAAGTCTCAGAATGTAGAAACGCCACGTGTCTTTACGAGGTTTCTTACGGTGATGG 714
Query 719 TTCTTACACCGTCGGAGATTTCGCCACCGAGACTCTTACAATCGGCTCAACTTTAGTCCA 778
|||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 715 TTCTTACACCGTTGGAGATTTCGCCACCGAGACTCTCACAATCGGCTCAACTCTAGTTCA 774
Query 779 AAACGTCGCCGTTGGATGTGGACACAGCAACGAAGGGTTGTTCGTTGGCGCAGCCGGTTT 838
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 775 AAACGTCGCCGTTGGTTGTGGACACAGCAACGAAGGGTTGTTCGTCGGCGCCGCCGGTTT 834
Query 839 GCTTGGACTCGGCGGTGGTTTGCTGGCTCTTCCGTCGCAGCTTAACACGACGTCGTTTTC 898
||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| ||
Sbjct 835 ACTTGGACTCGGCGGTGGTTTGTTAGCTCTTCCGTCGCAGCTCAACACGACGTCGTTCTC 894
Query 899 GTACTGCCTTGTTGACCGTGACTCAGACTCGGCTTCAACCGTTGAGTTCGGGACTTCTCT 958
|||||| || |||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 895 GTACTGTCTCGTTGACCGTGACTCAGACTCGGCTTCGACCGTGGATTTCGGGACTTCTCT 954
Query 959 TCCTCCTGACGCCGTCGTAGCTCCGTTGCTACGTAACCACCAGCTCGACACGTTTTACTA 1018
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTCTCCTGACGCCGTCGTGGCTCCGTTGCTACGTAACCACCAGCTCGACACGTTTTACTA 1014
Query 1019 CCTAGGCCTCACCGGAATAAGCGTTGGCGGCGAGTTACTTCAGATTCCTCAGTCTTCTTT 1078
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1015 CCTAGGCCTCACCGGAATAAGCGTCGGCGGCGAGTTGCTTCAGATTCCTCAGTCTTCTTT 1074
Query 1079 CGAGATGGACGAGTCAGGAAGCGGTGGAATCATCATCGATTCAGGAACCGCCGTGACTCG 1138
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1075 CGAGATGGACGAGTCAGGCAGCGGTGGGATCATCATCGACTCAGGAACCGCCGTGACTCG 1134
Query 1139 TCTCCAGACCGGAATCTATAACTCTCTTAGAGACTCGTTCTTGAAAGGAACGTCGGACTT 1198
||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||
Sbjct 1135 TCTCCAGACCGAAATCTATAACTCGCTTAGAGACTCGTTCGTGAAAGGAACGTTGGACTT 1194
Query 1199 GGAAAAAGCTGCCGGAGTGGCCATGTTCGATACGTGTTACAATCTTTCTGCTAAGACGAC 1258
||||||||| ||||| ||||| ||||| || |||||||| || ||||| |||||||||||
Sbjct 1195 GGAAAAAGCAGCCGGGGTGGCGATGTTTGACACGTGTTATAACCTTTCGGCTAAGACGAC 1254
Query 1259 GATAGAAGTCCCGACGGTGGCTTTTCACTTCCCCGGCGGGAAGATGTTAGCTTTGCCGGC 1318
| ||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1255 GGTAGAAGTCCCGACCGTGGCTTTTCATTTCCCCGGCGGGAAGATGTTGGCTTTGCCGGC 1314
Query 1319 GAAGAATTACATGATTCCGGTAGACTCGGTGGGGACTTTTTGTTTGGCGTTTGCACCGAC 1378
|||||| |||||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 1315 GAAGAACTACATGATTCCGGTTGACTCGGTGGGGACATTTTGTTTGGCATTTGCACCGAC 1374
Query 1379 GGCGAGTTCGCTAGCGATCATCGGAAACGTGCAGCAACAAGGGACACGTGTCACGTTCGA 1438
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1375 GGCGAGTTCACTAGCGATTATCGGAAACGTGCAGCAACAAGGGACACGTGTCACTTTCGA 1434
Query 1439 TTTGGCAAATTCTCTCATTGGATTCTCGTCTAATAAATGCTAAGCTGtttt 1489
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 TTTGGCAAATTCTCTCATTGGATTCTCGTCTAATAAATGCTAAGCTGTTTT 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74045803875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5