BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921676

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G25422.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   540    4e-153


> AT1G25422.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G68500.1); 
Has 16 Blast hits to 16 proteins in 6 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8918852-8919892 
FORWARD LENGTH=1041
Length=1041

 Score =  540 bits (292),  Expect = 4e-153
 Identities = 349/375 (93%), Gaps = 9/375 (2%)
 Strand=Plus/Plus

Query  1    ATAAATACATTGATCATATATATgaagaaggagaggaagagacaagtaccggaggagaag  60
            ||| |||||||||||| ||  ||||||||||||||||||||||||||| |  | | | ||
Sbjct  215  ATACATACATTGATCACATCCATGAAGAAGGAGAGGAAGAGACAAGTA-C--A-G-G-AG  268

Query  61   gaggaggagagggagatggaggtggaggtggttgtggtggaTGCATTGGCTGCAGCAGCA  120
            ||||| | || ||||| |||||||||||| |||||||||||||| ||| | |||||||||
Sbjct  269  GAGGA-G-GA-GGAGAAGGAGGTGGAGGTTGTTGTGGTGGATGCGTTGACAGCAGCAGCA  325

Query  121  ACGGTGGCTGCGGCTGCGGCGGTGGAGGAGGAGGAGGAATTGTGGGGGATGAGGCTTAAG  180
            ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  326  ACGGTGGCTGCGGCTGCGGCGATGGAGGAGGAGGAGCAATTGTGGGGGATGAGGCTTAAG  385

Query  181  GCGGGAGATGATGTGGTCGACGAGCTGATGACGTGGAGCACGGTTTGGTTGCCTTCATGT  240
            |||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  386  GCGGGAGATGGTGTGGTCGACGAGCTGATGACGTGGAACACCGTTTGGTTGCCTTCATGT  445

Query  241  TGGGACGTGGAGTTCGTTGAGAAAAACTATGGAGTTCTGTATAATGATGTTGTGTGGGAC  300
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  446  TGGGACGTGGAGTTCGTTGAGAAAAACTATGGAGTTTTGTATAATGATGTTGTGTGGGAC  505

Query  301  GATGATCTTTGGAATTTGAACACTTCCCCTCAGGATAACATAAGACAAAGCTGAAGTTGG  360
            ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct  506  GATGATCTTTGGAATTTGAACACTTCCACTCAGGATAACATAAGACAAAACTGAAGTTGG  565

Query  361  GGAGATTTTTAACGT  375
            |||||||||||||||
Sbjct  566  GGAGATTTTTAACGT  580



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5