BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921678 Length=1016 Score E Sequences producing significant alignments: (Bits) Value AT1G25420.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1677 0.0 > AT1G25420.1 | Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr1:8916059-8918232 FORWARD LENGTH=1306 Length=1306 Score = 1677 bits (908), Expect = 0.0 Identities = 982/1018 (96%), Gaps = 4/1018 (0%) Strand=Plus/Plus Query 1 TTGATTCCCTCTAC-TCCGATTCAATGTCGCTGCTAAACCAACTCTTCAACCGTGGGATC 59 |||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTGATT-CCTCTGCTTCCGGTTCAATGTCGCTGCTAAACCAACTCTTCAACCGTGGGATC 118 Query 60 TTTGGCGCCAAATGCAAGACAAGCTTGAATTTGGCGATTGCTCGAATGAAATTGCTGCAA 119 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 119 TTTGGCGCCAAATGCAAGACAAGCTTGAACTTGGCGATAGCTCGAATGAAATTGCTGCAA 178 Query 120 AACAAGAGAGATATGCAGCTTAAACATATGAAGAAGGAGATAGCTCAGTTCTTGCAAGCC 179 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 179 AACAAGAGAGATATGCAGCTTAAACATATGAAGAAGGAGATAGCTCACTTCTTGCAAGCT 238 Query 180 GGACAAGAACCCATTGCTCGAATTCGGGTGGAGCATGTGATCAGAGAAATGAATTTATGG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GGACAAGAACCCATTGCTCGAATTCGGGTGGAGCATGTGATCAGAGAAATGAATTTATGG 298 Query 240 GCAGCTTATGAGATATTGGAGCTATTCTGCGAGTTTGTACTTGCTCGTGTTCCAATTCTC 299 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 299 GCAGCTTATGAGATATTGGAGCTATTCTGCGAGTTTATACTTGCTCGTGTTCCAATTCTT 358 Query 300 GAAAGTGAAAAGGAATGCCCGAGAGAGTTGAGAGAGGCTATTGCTAGCATTATCTTTGCT 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 GAAAGTGAAAAGGAATGCCCGAGAGAGTTGAGAGAGGCTATTGCTAGCATTATCTTTGCT 418 Query 360 GCTCCAAGGTGCTCTGAAGTACCTGATCTTCTTCAAATTAAGAATCTCTTTGGTACAAAA 419 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 419 GCTCCAAGGTGCTCTGAAGTACCTGATCTTCTTCAAATAAAGAATCTGTTTGGTACAAAA 478 Query 420 TATGGAAAAGAATTTATCATGGTTGCTTCTGAGCTTCGTCCCGATTCTGGTGTCAATCGT 479 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 479 TATGGAAAAGAATTTATCATGGTTGCTTCTGAGCTTCGTCCGGATTCTGGTGTCAATCGT 538 Query 480 ACTATCATTGAAAAGCTTTCTCCTACCAGTCCATCGGGAGAGGCAAGGCTCAAGATGTTA 539 ||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 539 ACTATCATTGAGAAGCTTTCTCCTACCAGTCCATCTGGAGCGGCAAGGCTCAAGATGTTA 598 Query 540 AAGGAAATTGCGAAGGAGTACAGTTTGAATTGGGATTCTTCTGCCACGGAAGCTGAGTTC 599 |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 599 AAGGAAATTGCGCAGGAGTACAGTTTGAATTGGGATTCTTCTGCCACGGAAGCAGAGTTC 658 Query 600 ATGAAGAGCCATGAAGACCTACTGGGTGGAGCTAAGCAAATACATCGTCAAGATGGTATC 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 ATGAAGAGCCATGAAGACCTACTGGGTGGAGCTAAGCAAATACATCGTCAAGATGGTATC 718 Query 660 TCTGAATCTCGACCGTCCCAGCAAGGCTACAGTCAGTCTTCGGTTTCTAGGGAGGCTGAA 719 |||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||| Sbjct 719 TCTGAATCTCGACCGTCCCAACAAGGCTACGGTCAGTCTTCGGTTTCTAGGGAAGTTGAA 778 Query 720 AGTCTGCCTGCAGATGCCACACAGAGATTCCAAAAGCTTCAAGCTCAAAACCCAGTGAGC 779 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 AGTCTGCCTGCAGAGGCCACACAGAGATTCCAAAAGCTTCAAGCTCAAAACCCAGTGAGC 838 Query 780 AAAAACATGCCATCATCTAAACTGACTTCAGC-TTCTCAAGCTCCTCCTGATACTAGACG 838 |||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 839 AAAAGCATGCCATCATCTAAGCTGACTTCAGCCTT-TCAAGCTCCTCCTGATACTAGACG 897 Query 839 GGATCAGACTGATGTAATGGAGAGAGCTCGAGCTGCTCTAGCTAGCGCTGATCGTGCAAC 898 | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| Sbjct 898 GAATCAGACTGATGTAATGGAGATAGCTCGAGCTGCCCTAGCTAGCGCTGATCGTGCAAC 957 Query 899 AGCAGCTGCTCGTGCTGCTGCGCAACTAGTGAATGTCTCTTATGGGGCTCCTACACCCAC 958 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 958 AGCAGCTGCTCGTGCTGCTGCGCAACTAGTGAATGTCTCTTATGGGGCTACTACACCCAC 1017 Query 959 AGTAGCAGCCGAAGGGAAGTCCTTAAACTTAACGTAGTGGCCACGTCATCATTTGTGA 1016 ||||||||| ||||||||| |||||||||||| ||||| |||||||| |||||||||| Sbjct 1018 AGTAGCAGCAGAAGGGAAGCCCTTAAACTTAATGTAGTTGCCACGTCGTCATTTGTGA 1075 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49782039677 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5