BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921678
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25420.1 | Symbols: | Regulator of Vps4 activity in the MVB... 1677 0.0
> AT1G25420.1 | Symbols: | Regulator of Vps4 activity in the MVB
pathway protein | chr1:8916059-8918232 FORWARD LENGTH=1306
Length=1306
Score = 1677 bits (908), Expect = 0.0
Identities = 982/1018 (96%), Gaps = 4/1018 (0%)
Strand=Plus/Plus
Query 1 TTGATTCCCTCTAC-TCCGATTCAATGTCGCTGCTAAACCAACTCTTCAACCGTGGGATC 59
|||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTGATT-CCTCTGCTTCCGGTTCAATGTCGCTGCTAAACCAACTCTTCAACCGTGGGATC 118
Query 60 TTTGGCGCCAAATGCAAGACAAGCTTGAATTTGGCGATTGCTCGAATGAAATTGCTGCAA 119
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 119 TTTGGCGCCAAATGCAAGACAAGCTTGAACTTGGCGATAGCTCGAATGAAATTGCTGCAA 178
Query 120 AACAAGAGAGATATGCAGCTTAAACATATGAAGAAGGAGATAGCTCAGTTCTTGCAAGCC 179
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 179 AACAAGAGAGATATGCAGCTTAAACATATGAAGAAGGAGATAGCTCACTTCTTGCAAGCT 238
Query 180 GGACAAGAACCCATTGCTCGAATTCGGGTGGAGCATGTGATCAGAGAAATGAATTTATGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGACAAGAACCCATTGCTCGAATTCGGGTGGAGCATGTGATCAGAGAAATGAATTTATGG 298
Query 240 GCAGCTTATGAGATATTGGAGCTATTCTGCGAGTTTGTACTTGCTCGTGTTCCAATTCTC 299
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 GCAGCTTATGAGATATTGGAGCTATTCTGCGAGTTTATACTTGCTCGTGTTCCAATTCTT 358
Query 300 GAAAGTGAAAAGGAATGCCCGAGAGAGTTGAGAGAGGCTATTGCTAGCATTATCTTTGCT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAAGTGAAAAGGAATGCCCGAGAGAGTTGAGAGAGGCTATTGCTAGCATTATCTTTGCT 418
Query 360 GCTCCAAGGTGCTCTGAAGTACCTGATCTTCTTCAAATTAAGAATCTCTTTGGTACAAAA 419
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 419 GCTCCAAGGTGCTCTGAAGTACCTGATCTTCTTCAAATAAAGAATCTGTTTGGTACAAAA 478
Query 420 TATGGAAAAGAATTTATCATGGTTGCTTCTGAGCTTCGTCCCGATTCTGGTGTCAATCGT 479
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 TATGGAAAAGAATTTATCATGGTTGCTTCTGAGCTTCGTCCGGATTCTGGTGTCAATCGT 538
Query 480 ACTATCATTGAAAAGCTTTCTCCTACCAGTCCATCGGGAGAGGCAAGGCTCAAGATGTTA 539
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 539 ACTATCATTGAGAAGCTTTCTCCTACCAGTCCATCTGGAGCGGCAAGGCTCAAGATGTTA 598
Query 540 AAGGAAATTGCGAAGGAGTACAGTTTGAATTGGGATTCTTCTGCCACGGAAGCTGAGTTC 599
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 AAGGAAATTGCGCAGGAGTACAGTTTGAATTGGGATTCTTCTGCCACGGAAGCAGAGTTC 658
Query 600 ATGAAGAGCCATGAAGACCTACTGGGTGGAGCTAAGCAAATACATCGTCAAGATGGTATC 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATGAAGAGCCATGAAGACCTACTGGGTGGAGCTAAGCAAATACATCGTCAAGATGGTATC 718
Query 660 TCTGAATCTCGACCGTCCCAGCAAGGCTACAGTCAGTCTTCGGTTTCTAGGGAGGCTGAA 719
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||
Sbjct 719 TCTGAATCTCGACCGTCCCAACAAGGCTACGGTCAGTCTTCGGTTTCTAGGGAAGTTGAA 778
Query 720 AGTCTGCCTGCAGATGCCACACAGAGATTCCAAAAGCTTCAAGCTCAAAACCCAGTGAGC 779
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTCTGCCTGCAGAGGCCACACAGAGATTCCAAAAGCTTCAAGCTCAAAACCCAGTGAGC 838
Query 780 AAAAACATGCCATCATCTAAACTGACTTCAGC-TTCTCAAGCTCCTCCTGATACTAGACG 838
|||| ||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 839 AAAAGCATGCCATCATCTAAGCTGACTTCAGCCTT-TCAAGCTCCTCCTGATACTAGACG 897
Query 839 GGATCAGACTGATGTAATGGAGAGAGCTCGAGCTGCTCTAGCTAGCGCTGATCGTGCAAC 898
| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 898 GAATCAGACTGATGTAATGGAGATAGCTCGAGCTGCCCTAGCTAGCGCTGATCGTGCAAC 957
Query 899 AGCAGCTGCTCGTGCTGCTGCGCAACTAGTGAATGTCTCTTATGGGGCTCCTACACCCAC 958
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 AGCAGCTGCTCGTGCTGCTGCGCAACTAGTGAATGTCTCTTATGGGGCTACTACACCCAC 1017
Query 959 AGTAGCAGCCGAAGGGAAGTCCTTAAACTTAACGTAGTGGCCACGTCATCATTTGTGA 1016
||||||||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct 1018 AGTAGCAGCAGAAGGGAAGCCCTTAAACTTAATGTAGTTGCCACGTCGTCATTTGTGA 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5