BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921679
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25400.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1273 0.0
> AT1G25400.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G68440.1);
Has 21 Blast hits to 21 proteins in 6 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8911130-8912398
REVERSE LENGTH=1269
Length=1269
Score = 1273 bits (689), Expect = 0.0
Identities = 841/910 (92%), Gaps = 27/910 (3%)
Strand=Plus/Plus
Query 13 TTTCTGTCATGGAGGTCCCGATAATAAACAGAATAAGCGATTTTGACGTGGGGATAAACT 72
||||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 62 TTTCTGTGATGGAGGTCCCGATTATAAACAGAATAGGCGATTTTGACATGGGGATAAACT 121
Query 73 CGATAAACGACCCGTCGTATTTATCTCGAGCTTTGGCCGTCTCCGGCGTCGGAAAGTTAC 132
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 122 CGATAAACGACCCGTCGTATTTATCTCGAGCTTTGGCAGTCTCCGGTGTCGGAAAGTTAC 181
Query 133 ATCAAGCTTATAGTTTCTGGAAATGGGGCGCTTTATTGCTACTTGCATTTTTTGCTTCAT 192
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182 ATCAAGCTTATAGTTTTTGGAAATGGGGCGCCTTATTGCTACTTGCATTTTTTGCTTCAT 241
Query 193 TTACATCGTTAACTACAAGAATCAAGGCTTTAGTCTCTAGATTAAGAAATGTAAACGTGT 252
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 242 TTACATCGTTAACTACAAGAATCAAGACTTTAGTCTTTAGATTAAGAAATGTAAACGTGT 301
Query 253 CTCTACCTTCCCCAACTCTTTTGTGTAATTACGACAGCGATTCCGATTGGTCTTT-TGCG 311
|||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| | ||
Sbjct 302 CTCTACCTTCCCAAACTCTTTTATGTAATTACGACAGCGACTCCGATTGGTCTTTCT-CG 360
Query 312 TCAGACTCTTCAGAC-----G-AAGATGATGACGATGACAAAGAAGATGAATCGGTCAAT 365
||||||||||||||| | ||||||| |||||| ||||||||||||| |||||||||
Sbjct 361 TCAGACTCTTCAGACGAAGAGAAAGATGAGGACGATAACAAAGAAGATGACTCGGTCAAT 420
Query 366 GGAGATTTACGCGTTAAAAGATTTAGTTATTTCCATGATGATGATGATAAGGCTATAAAT 425
|| |||| ||||||| |||||||| |||||| |||||||||||||||||||| ||| | |
Sbjct 421 GGCGATTCACGCGTTCAAAGATTTGGTTATTACCATGATGATGATGATAAGGGTATTAGT 480
Query 426 GGAAATGTCCCCTGGTTGCGGCGGTGCAGTGGTAGCTTCGGAGACTTGTTAGATTTAGGC 485
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GGAAGTGTCCCCTGGTTGCGGCGGTGCAGTGGTAGCTTCGGAGATTTGTTAGATTTAGGC 540
Query 486 TCGAGCGGAGTCGTGAAGCTTTGGGACAATCTTGATTTCAACGGAGAAGGAAGTCACCGT 545
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 541 TCAAGCGGAGTCGTGAAGCTTTGGGACAATCTTGATTTCAACGGAGAAGGAAGTC-C-G- 597
Query 546 AAGGCGGTGGCTTCTTTTTTGAGCAAATGCGGCTCTTACTCGTTGTTGTCGTCGGCGGTT 605
| ||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 598 --G----TGGCTTCTTTTTTCAGCAAATGCGGCTCATACTCGTTATTGTCATCGGCGGTT 651
Query 606 TTATTAGCGGCGGAGAAGAAAGGATCCGACGGCCTGGAAGTGAGTGCGTGGGATGCACGC 665
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 652 TTATTAGCGGCGGAGAAGAAAGGATCCGACGGCTTGGAAGTGAGTGCGTGGGATGCACGC 711
Query 666 GCCGGTTTTGGGGTCCCCGCGTTGCTCGCGGAATGGAAGCAGCCGGGGCGGTTACTTGGG 725
| ||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 712 GTTGGTTTTGGGGTGCCCGCGTTGCTCGCGGAATGGAAGCAGCCGGGAAGGTTACTCGGG 771
Query 726 AAGATCATTAGGGTTGACGTTGGTGACGTGGACAAGATCTACGTCGGTGATGACGTCGGA 785
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 772 AAGATCATTAGGGTTGACGTAGGTGACGTGGACAAGATCTACGTCGGTGATGACGTCGAA 831
Query 786 GGAGAGATTACTGTGGGAGACATGAGGATGGTTAACGGTGCGTTGACGGAACTGACTGAA 845
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 832 GGAGAGATTACTGTGGGAGACATGAGGATGGTTAACGGTGCGTTGACGGAACTGACGGAA 891
Query 846 TCAGAGGTTGAG-GGAATGGTGAGAAGACGCCGACGCCGACGCCGTCATTGATGAGCTGA 904
|||||||||||| ||| |||||||||||||| | | ||||||||||||| | |||||
Sbjct 892 TCAGAGGTTGAGAGGA-TGGTGAGAAGACGC--A-G---ACGCCGTCATTGA-G-GCTGA 942
Query 905 CGGTTCCGTT 914
|||| |||||
Sbjct 943 CGGTGCCGTT 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5