BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921680
Length=1930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25390.1 | Symbols: | Protein kinase superfamily protein | ... 2874 0.0
> AT1G25390.1 | Symbols: | Protein kinase superfamily protein
| chr1:8906452-8908854 REVERSE LENGTH=2132
Length=2132
Score = 2874 bits (1556), Expect = 0.0
Identities = 1815/1939 (94%), Gaps = 22/1939 (1%)
Strand=Plus/Plus
Query 3 CTTCTAATCAGAACACATATGGAGACTGTCTCTGTTTTGCTCTTCTTCTTCCTCTTCCTT 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 CTTCTAATCAGAATACCTATGGAGACTGTCTCTGTTTTGCTCTTCTTCTTCCTCTTCCTT 96
Query 63 CTTGTGGCAGAAGCCAGGAGTACCTACCGGAGAGGTTGCGACTATTTCACCTGCGGAGAA 122
|| | ||||||||| ||||| ||| | |||| ||||||| | |||||||||||||||||
Sbjct 97 CTAGCGGCAGAAGCAAGGAGCACCAAGCGGACAGGTTGCAAGGATTTCACCTGCGGAGAA 156
Query 123 -TTCGACTTCAAGTTCCCTTTCTTTAGCACA-ACTATGCCGTCTCGATGCGGTCTTTTCA 180
| ||||||||||||||||||||||| ||| || ||||| |||||||||||||||||||
Sbjct 157 CAT-GACTTCAAGTTCCCTTTCTTTAGGACAGAC-ATGCCATCTCGATGCGGTCTTTTCA 214
Query 181 AGCTGAACTGCAGTGCAAAT-GTCTCAGAGATACAGCTTGTAGAAGATGGGCGATGGTAT 239
|||||||||||||||||||| || ||||||||||||||| | |||||||| |||||||
Sbjct 215 AGCTGAACTGCAGTGCAAATATTC-CAGAGATACAGCTTGAAAAAGATGGGAAATGGTAT 273
Query 240 AAAGTCAAGAGTGTCTCTCAAGCCAACACGATAACAATCACCGACCCGAGGCTTAACCAA 299
| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 274 ACAGTCAAGAGCGTCTCTCAAGCCAACACGATAACCATCATCGACCCGAGGCTTAACCAA 333
Query 300 AGCTTGACAACCGGAAGCTGCAGTGACTTGTCAAACTTCTCTATTCCAGATTCGCCATGG 359
||||||||||||||| |||||||||||||||||| ||||||| |||||||||| ||||||
Sbjct 334 AGCTTGACAACCGGAGGCTGCAGTGACTTGTCAAGCTTCTCTCTTCCAGATTCTCCATGG 393
Query 360 CTCAACTTGACCACTTTGTACAAATGCAACAACAGTAGTAGGAAGAATGGTTTCAGCTAT 419
||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 394 CTCAAATTGAACACGTTGTACAAATGCAACAATAGTAGTAGGAAGAATGGTTTCAGCTAT 453
Query 420 GCGAATTGCGGAGGAGAAGGAAGCAGCTTGTACTACAATTTGGGAGATGATCATGATGTT 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 GCGAATTGCAGAGGAGAAGGAAGCAGCTTGTACTACAATTTGGGAGATGATCATGATGTT 513
Query 480 TCAGGGTGTTCACCTATCAAGACTCCAGAGAGCTGGGTGCCTCCAAGAAATGGGAACCAG 539
||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 514 TCAGGGTGTTCACCTATTAAGACTCCAGAGAGCTGGGTGACTCCAAAAAATGGGAACCTG 573
Query 540 TCTGATGTAAATGCTACCTTCTCTCTCCATATAGAACTGCCTGG-AGGCTGCTTTCGCTG 598
|||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 574 TCTGATGTAAATGCTACCTTCTCTCTTCATATAGAACTGCCTGGGAA-CTGCTTTCGCTG 632
Query 599 CCACAATAACGGTGGAGAATGTA-AGATGATCAAAGACAAGTT-CCACTGCGATGGAGGA 656
||||||||||||||||||||||| | | | | ||| |||| || || |||| ||| | |
Sbjct 633 CCACAATAACGGTGGAGAATGTACAAAGGTTAAAA-ACAA-TTACCGTTGCGTTGGCGCA 690
Query 657 ACCAAAGAAC-AAA-AAGGCTACCATAAGGAGATGAGGCTAGGATTAGCTATCGGAGG-T 713
| || ||||| ||| || ||||||| |||||||||||||||||||| || ||||| |
Sbjct 691 AACACAGAACCAAATAA--CTACCATGCGGAGATGAGGCTAGGATTAGGAATAGGAGGAT 748
Query 714 CCTGTCATCTTGATAATCACCTTGGTGGCACTCTTTGCTATCATCCATAGGAATTACAGA 773
| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 749 C-TGTCATCTTGATAATCATCTTGGTGGCACTCTTTGCTGTCATCCATAGGAATTACAGA 807
Query 774 AGGAAAGATGGATCAGAGCTCTCTAGAGACAACTCAAAATCTGACGTTGAGTTTAGTCAT 833
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 808 AGGAAAGATGGTTCAGAGCTCTCCAGAGACAACTCAAAATCTGACGTTGAGTTTAGTCAA 867
Query 834 GTCTTCTTTAAGATACCAATCTTCTCCTATAAAGAACTTCAAGCAGCAACAGACAACTTT 893
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 868 GTCTTCTTTAAGATACCAATCTTCTCCTATAAGGAACTTCAAGCAGCAACAGACAACTTT 927
Query 894 AGTAAAGACAGATTACTTGGAGATGGAGGCTTTGGCACTGTGTATTATGGAAAAGTGCGT 953
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 928 AGTAAAGACAGATTACTAGGAGATGGAGGCTTTGGCACTGTGTACTATGGAAAAGTGCGT 987
Query 954 GATGGACGAGAAGTTGCAGTGAAGCGTCTCTATGAGCACAATTACAGAAGACTTGAGCAA 1013
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GATGGGCGAGAAGTTGCAGTGAAGCGTCTCTATGAGCACAATTACAGAAGACTTGAGCAA 1047
Query 1014 TTTATGAACGAGATAGAAATCCTCACACGTCTCCATCACAAGAATCTAGTCTCCCTCTAC 1073
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 TTCATGAACGAGATAGAAATCCTCACACGTCTCCATCACAAGAATCTAGTCTCCCTCTAT 1107
Query 1074 GGATGCACTTCACGCCGTAGCCGAGAGCTTCTCCTTGTCTATGAGTTTATTCCAAATGGC 1133
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GGATGCACTTCACGCCGCAGCCGAGAGCTTCTCCTTGTCTATGAGTTTATTCCAAATGGC 1167
Query 1134 ACAGTTGCAGATCATCTCTATGGTGAAAACACGCCACACCAAGGCTATTTAACATGGTCA 1193
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1168 ACAGTTGCAGATCATCTCTATGGCGAAAACACGCCACACCAAGGCTTTTTAACATGGTCA 1227
Query 1194 ATGCGCCTGAACATTGCCATAGAAACAGCGAGTGCATTGGCTTACCTTCACGCTTCGGAT 1253
|||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1228 ATGCGCCTGAGCATCGCCATAGAAACAGCGAGTGCATTGGCTTACCTTCATGCTTCGGAT 1287
Query 1254 ATCATACACCGTGATGTCAAGACTACAAACATTCTCCTCGACGGGAATTTCGGAGTTAAA 1313
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1288 ATCATACACCGGGATGTCAAGACTACAAACATTCTCCTCGACAGGAATTTCGGAGTAAAA 1347
Query 1314 GTCGCGGATTTTGGGCTATCCAGGTTGTTACCGAGTGATGTAACACATGTTTCAACTGCT 1373
||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1348 GTCGCGGATTTTGGGCTATCCAGGTTGCTCCCGAGTGATGTAACTCATGTTTCAACTGCT 1407
Query 1374 CCTCAGGGTACTCCGGGATATGTGGATCCTGAGTATCATCGGTGTTATCATCTAACTGAT 1433
|||||||||||||||||||| |||||||| || |||||||| || ||||||||||| |||
Sbjct 1408 CCTCAGGGTACTCCGGGATACGTGGATCCAGAATATCATCGCTGCTATCATCTAACAGAT 1467
Query 1434 AAAAGTGACGTGTATAGCTTTGGAGTGGTGCTTGTCGAGCTGATATCCTCGAAGCCTGCT 1493
|| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1468 AAGAGTGACGTGTATAGCTTTGGGGTGGTGCTTGTCGAGCTGATATCATCGAAGCCTGCT 1527
Query 1494 GTTGATATAAGCAGGTGCAAGAGTGAGATCAATCTATCAAGCTTAGCTATAAACAAGATA 1553
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1528 GTTGATATAAGTAGATGCAAGAGTGAGATCAATCTATCAAGCTTAGCAATAAACAAGATA 1587
Query 1554 CAGAACCACGCGACCCACGAGCTAATTGATCAGAATCTTGGATATGCAACAAATGAAGGA 1613
|| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1588 CAAAACCATGCGACCCACGAGCTGATTGATCAGAATCTTGGATATGCAACGAATGAAGGA 1647
Query 1614 GTTAGAAAAATGACTACAATGGTGGCAGAGTTGGCTTTTCAGTGCTTGCAGCAAGACAGT 1673
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1648 GTTAGAAAAATGACTACAATGGTGGCAGAGTTGGCTTTTCAGTGCTTGCAGCAAGACAAT 1707
Query 1674 ACAATGAGACCCACAATGGAACAAGTTGTGCAAGAGCTAAAAGGAATCCAGAATGAGGAG 1733
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1708 ACAATGAGACCCACAATGGAACAAGTTGTGCACGAGCTAAAAGGAATCCAGAATGAGGAG 1767
Query 1734 CAAAAATGTC-ATACCAACGA-TCACAGAGAGGAGACAATAACTCTGCACCCTTCGCCAC 1791
|||||||||| | ||| |||| | |||||||||||||||||| || |||||||||||||
Sbjct 1768 CAAAAATGTCCA-ACCTACGACT-ACAGAGAGGAGACAATAATTCCACACCCTTCGCCAC 1825
Query 1792 CAGATTGGGGTGAGGCTGCACTATTAAAAAATATGAAATTCCCACGTTCACCAATCTCTG 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1826 CAGATTGGGGTGAGGCTGCACTATTAAAAAATATGAAATTCCCACGTTCACCAGTCTCTG 1885
Query 1852 TGACTGACCAATGGACAAGTAAATCAACCACACCGAATACGAGCGCCTACGAATTCTAGG 1911
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1886 TGACTGACCAATGGACAAGTAAATCAACCACACCGAATACCAGCGCCTACGAATTCTAGG 1945
Query 1912 ATCCACCAGGTATTGGTTT 1930
|||||||||||||||||||
Sbjct 1946 ATCCACCAGGTATTGGTTT 1964
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95581837680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5