BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921700
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25240.1 | Symbols: | ENTH/VHS/GAT family protein | chr1:88... 1923 0.0
> AT1G25240.1 | Symbols: | ENTH/VHS/GAT family protein | chr1:8845231-8846493
FORWARD LENGTH=1263
Length=1263
Score = 1923 bits (1041), Expect = 0.0
Identities = 1117/1154 (97%), Gaps = 4/1154 (0%)
Strand=Plus/Plus
Query 21 ATGAAGCTGTGGAAGCGGGCTTCCGGTGCTCTCAAAGACCGGAAAACCTTGTTTTCCATC 80
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAAGCTGTGGAAACGGGCTTCCGGTGCTCTCAAAGACCGGAAAACCTTGTTTACCATC 60
Query 81 GGCTTCTCCCGGAAAACCTCCTTCCGCAACCCTGACCTTGATTCTGCCATCATCTACGCA 140
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 GGCTTCTCCCGGAAAACCTCCTTCCGCAACCCTGACCTTGATTCTGCCATCATCCACGCA 120
Query 141 ACCTCTCACGATGACTCATCTGTCGATTACCACAATGCTCATCGTGTCTACAAATGGATC 200
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 ACCTCTCACGATGACTCATCTGTCGATTACCACAATGCTCACCGTGTCTACAAATGGATC 180
Query 201 CGATCCTCTCCCGCCAATCTCAAGCCGCTTGTTCATGCCCTTTCGTCTCGGGTAAACCGC 260
|| ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||
Sbjct 181 CGGTCCTCTCCCGCCAATCTCAAGCCGCTTGTTCATGCTCTTTCATCTAGGGTTAACCGC 240
Query 261 ACAAGAAGCTGGATTGTTGCCTTGAAAGCCTTAATGCTTGTCCACGGTGTGCTTTGCTGC 320
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAAGAAGCTGGATTGTAGCCTTGAAAGCCTTAATGCTTGTCCACGGTGTGCTTTGCTGC 300
Query 321 AAAGTCACGTCCCTTCAAGAAATTCGTCGCCTCCCTTTCGACCTCTCGGATTTCTCGGAT 380
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 AAAGTCACGTCCCTTCAAGAAATTCGTCGCCTCCCTTTCGATCTCTCGGATTTCTCGGAT 360
Query 381 GGTCATTCCCGTCCCAGCAAGACTTGGGGTTTCAACGCTTTTATCCGCGCCTATTTCTCG 440
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGTCATTCCCGTCCCAGCAAAACTTGGGGTTTCAACGCTTTTATCCGCGCCTATTTCTCG 420
Query 441 TTTCTTGACCAGTACTCTTTCTTTTTATCGGATCAAATCCGTCGTCGCCACAAAAAACCT 500
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 TTTCTTGACCAGTACTCTTTCTTTTTATCCGATCAAATCCGTCGTCGCCACAAAAAACCT 480
Query 501 CAGCTAGATTCGGTTAACCAAGAGCTCGAAAGGATCCAGAAACTTCAGTCTCTTCTCCAT 560
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 481 CAGCTAGATTCGGTTAACCAAGAGCTCGAAAGAATCGAGAAACTTCAGTCTCTTCTCCAT 540
Query 561 ATGCTTCTCCAGATCCGTCCAATGGCTGACAACATGAAGAAGACGCTTATCCTTGAAGCC 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGCTTCTCCAGATCCGTCCAATGGCTGACAACATGAAGAAGACGCTTATCCTTGAAGCC 600
Query 621 ATGGACTGCGTGGTGATCGAGATCTTTGACATTTATGGAAGAATCTGTAGCGCTATCGCC 680
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 601 ATGGACTGCGTGGTGATCGAGATCTTCGACATTTATGGAAGAATATGTAGCGCTATCGCC 660
Query 681 AAGCTTCTCAT-AAAGATCCATCCAGCTGCTGGAAAAGCAGAAGCTGTGATTGCTCTTAA 739
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAGCTTCTCATCAAA-ATCCATCCAGCTGCTGGAAAAGCAGAAGCTGTGATTGCTCTTAA 719
Query 740 GGTTGTAAAGAAGGCTACATCTCAAGGAGAAGATCTCGCCCTCTACTTTGAGTTCTGCAA 799
| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 720 GATTGTAAAGAAGGCTACATCTCAAGGAGAAGATCTCGCACTCTACTTTGAATTCTGCAA 779
Query 800 AGAATTTGGGGTCTCAAACGCGCACGAAATTCCTAAATTCGTTAGAATCCCGGAAGAAGA 859
||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 780 AGAATTTGGGGTCTCAAACGCGCACGACATTCCTAAATTCGTGACAATCCCGGAAGAAGA 839
Query 860 CATTAAAGCAATCGAGAAAGTCATCAATGGAGTTgaagaagaagaggagaccaaaaagga 919
||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct 840 CATTAAAGCAATCGAGAAAGTCATCAATGGAGTAGAAGAAGAAGAGGTGAAAAAAAAGGA 899
Query 920 aga-gcaagtagaggaagagaagagTATCATATTAGTGGAGAGACCGGAGTTGCAGACAA 978
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGATG-AAGTAGAGGAAGAGAAGAGTATCATATTAGTGGAGAGACCGGAGTTGCAGACAA 958
Query 979 TCATAACCGATAAATGGGAAATTTTCGAAGACGACTTTTGTTTCACATGTAAGGATATTA 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCATAACCGATAAATGGGAAATTTTCGAAGACGACTTTTGTTTCACATGTAAGGATATTA 1018
Query 1039 AAGAAACTGATCAGCATAGAAAATGTAACGTGGATCCGAGTCCGCTGCCTCTAATAGTTA 1098
|||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct 1019 AAGAAACTGATCAGCATAGAAAGTTTAACATGGATCCGAGTCCGCTGCCTCTAATAGTTA 1078
Query 1099 TGGACGAGCCAGTTTACTTCACTCACACGTTACCAGATTTGATTACCTTTTAATTGCGAC 1158
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1079 TCGACGAGCCAGTTTACTTCACTCACACGTTACCAGATTTGATTACCTTCTAATTGCAAC 1138
Query 1159 TTGATCAGATTCAT 1172
||||||||||||||
Sbjct 1139 TTGATCAGATTCAT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5