BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921722

Length=266
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24600.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   401    1e-111


> AT1G24600.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G67920.1); 
Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8720309-8720721 
FORWARD LENGTH=413
Length=413

 Score =  401 bits (217),  Expect = 1e-111
 Identities = 248/263 (94%), Gaps = 2/263 (1%)
 Strand=Plus/Plus

Query  1    CTCTTCTGGTTTCACTCCCGATTTGGAATGGAGAAGAAGGCCAATCATGGAGATGATGGG  60
            ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct  41   CTCTT-TGGCTTCACTCCCGATTTGTAATGGAGAAGAAGGCCAATCATGGAGATGATGTG  99

Query  61   CATGAGAGTGTTCCTCCTATCCATAGCCAAGTCGTGAAGATCAAAAGGGAGTTTGAGAAG  120
            || ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  100  CAAGAGAGTGTTCCTATTATCCATAGCCAAGTCGTGAAGATCAAAAGGGAGTTTGAGAAG  159

Query  121  ATACAACACCCGTCACTAAAGCAGCCTGAGATGCCGTTGGTGCTCCGTGAGATCATGGGT  180
            |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct  160  ATACAACACCCGTCACTAAAGCAGCCTGAGATGCCGTTAGTGTTCCGCGAGATCATGGGT  219

Query  181  CCACGGCGTTCCCGTTCTCCCCTCGGTTTAGGAGAGCGAGAGAGATCCATCCCCGTTGGG  240
            ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  220  CCACGTCGTTCCCGTTCTCCCCTCGGTTTAGGAGAGCGAGAGAGATCAATCCCGGTTGGG  279

Query  241  AATTGATAACAAAAAGAGAGAGA  263
            |||||||| ||||| ||||||||
Sbjct  280  AATTGATA-CAAAAGGAGAGAGA  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12164795258


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5