BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921723
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24590.1 | Symbols: DRNL, DRN-LIKE, SOB2, ESR2 | DORNROSCHEN... 1456 0.0
> AT1G24590.1 | Symbols: DRNL, DRN-LIKE, SOB2, ESR2 | DORNROSCHEN-like
| chr1:8714389-8715309 REVERSE LENGTH=921
Length=921
Score = 1456 bits (788), Expect = 0.0
Identities = 876/919 (95%), Gaps = 4/919 (0%)
Strand=Plus/Plus
Query 21 ATGGAAGAAGCAATTATGAGACTCGAAGGTGCCGAGCACAGAGAAACCAACAACCATTCT 80
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATGGAAGAAGCAATCATGAGACTCGAAGGTGCCGAGCACAGAGAAACCAACATCCATTCT 60
Query 81 CT-AAAGAGAAAGCCATCAAGGCCTTCCTTGACAGCTCCTGGCTCTCCCGGAGGAGTAAC 139
| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 61 TTGAAA-AGAAAGCCATCAAGAACTTCCTCGACAGCTCCTGGCTCTCCCGGAGGAGTAAC 119
Query 140 TACCGCAAAAGCTGCCTCTGGCGCCGGCGCTTCCGGTGGCTCTACCATAAGGTACCGAGG 199
|||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 120 TACCGCAAAAGCTGCCTCCGGCGCCGGCGCTTCCGGTGTCTCTACGATAAGGTACCGAGG 179
Query 200 CGTGAGGCGTAGGCCATGGGGTCGTTACGCAGCTGAAATACGGGACCCATTGTCCAAGGA 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGTGAGGCGTAGGCCATGGGGTCGTTACGCAGCTGAAATACGGGACCCATTGTCCAAGGA 239
Query 260 GAGACGATGGCTCGGAACATTTGACACGGCCGAGGAAGCAGCTTGCGCATACGACTGCGC 319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GAGACGATGGCTCGGAACATTTGACACGGCCGAGGAAGCAGCTTGCGCATATGACTGCGC 299
Query 320 CGCTCGAGCCATGCGTGGTCTTAAAGCTCGAACCAACTTCGTCTACCCAATGCCTTCTCT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGCTCGAGCCATGCGTGGTCTTAAAGCTCGAACCAACTTCGTCTACCCAATGCCTTCTCT 359
Query 380 CGACTCTTATCACCATCGTATTTTCTCTTCTCCTCCAATGAATATGTTCCTTCTACGAGA 439
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CGACTCTTATCACCACCGTATTTTCTCGTCTCCTCCAATGAATATGTTCCTTCTACGAGA 419
Query 440 CGTTTTAAACTCTCAGTCTCTTTCTCCGTTAACCACTTTCGCTTACCCGCCTTGTAATCT 499
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGTGTTAAACTCTCAGTCTCTTTCTCCGTTAACCACTTTCGCTTACCCGCCTTGTAATCT 479
Query 500 TCCTAATGTAAACGACGTCGTTCACGAGTCCTTCACTAACGTTAACGATGTCTCCGAAGA 559
| |||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||
Sbjct 480 TTCTAACGTAAACGACGTTGTTCACGAGTCCTTCACTAACGTCAACGATGTCTGTGAAGA 539
Query 560 TCTCTCGCCTAAAGCTAAGAGGTCAAGTACCATTGAGAACGAGAGCCTGATCTCAAATAT 619
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 TCTCTCGCCTAAAGCTAAGAGGTCAAGTACCATTGAGAACGAGAGCCTGATATCAAATAT 599
Query 620 CTTTGAACCAGAACCAGCTGGTTCTGGTCTTCTCCAAGAAATTGTTCAAGGCTTCTTACC 679
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 CTTTGAACCAGAACCAGCTAGTTCTGGTCTTCTTCAAGAAATTGTTCAAGGCTTCTTACC 659
Query 680 AAAACCTATCTCTCAACATGATTCTATAGCTCCAAAGAGTAACCAACCGTCGGTTGGTGT 739
|||||||||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||
Sbjct 660 AAAACCTATCTCTCAACATGCTTCTATACCTCCAAAGAGCAACCAACAGTCGGTTGGTGT 719
Query 740 TTTCCCGACCATGCCAGAGACCGGTTTTCAGACAAATGTTCGTTTACCGGACGGCAATTT 799
||||||||| |||||||||| ||||||||||||| ||||||||||| | ||| | || |
Sbjct 720 TTTCCCGACGATGCCAGAGAGCGGTTTTCAGACAGATGTTCGTTTAGCTGACTTCCATGT 779
Query 800 CGAAGGAAACGGATTCGGTCAGGTGAAATATCATGGAGAGTTGGGTTGGGCTGATCATGA 859
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 780 CGAAGGAAACGGATTCGGTCAGGTTAAATATCATGGAGAGTTAGGTTGGGCTGATCATGA 839
Query 860 GAGA-GAGTTTGATTCAGCTAAGATGCAGCAGAACGGAAATGGTGGAATGTTTTATCAGT 918
|| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GA-ATGGGTTTGATTCAGCTAAGATGCAGCAGAACGGAAATGGTGGAATGTTTTATCAGT 898
Query 919 ATTGCTTTCATGATTATTA 937
|||||||||||||| ||||
Sbjct 899 ATTGCTTTCATGATGATTA 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46868459151
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5