BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921724

Length=296
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24577.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   342    9e-94


> AT1G24577.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G67910.2); 
Has 115 Blast hits to 115 proteins in 17 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 115; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8712478-8713032 
REVERSE LENGTH=555
Length=555

 Score =  342 bits (185),  Expect = 9e-94
 Identities = 227/247 (92%), Gaps = 4/247 (2%)
 Strand=Plus/Plus

Query  1    CTTCTTCTATTTCATATTCAAATTATGAACGACAAAGGAATCATGGAAACTGAAGCTTCC  60
            |||||||  ||| ||||||| ||||||||||||||||||| |||||| ||||||||||||
Sbjct  26   CTTCTTC--TTTAATATTCACATTATGAACGACAAAGGAAACATGGAGACTGAAGCTTCC  83

Query  61   ATAGCGGCGATGGGCCTTGGCGGACTGTCCCGTCAGACCAGCATCACTAAGAACAGCTGC  120
            |||||||||||||||||||| || |||||||||||||||||||||||||||| ||  |||
Sbjct  84   ATAGCGGCGATGGGCCTTGGGGGTCTGTCCCGTCAGACCAGCATCACTAAGACCATTTGC  143

Query  121  ATTTGCTCACCGACCACTCACCCGGGGTCATTCAGGTGCAAGCTTCACCGGACTCCTTCG  180
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  144  ATTTGCTCACCGACCACTCACCCGGGGTCATTCAAGTGCAAGCTTCACCGGACTCCTTCG  203

Query  181  CTGCAGCGTACCAAAAGCGTTGAGACTAACATACTTCAAAATCTTGTGAGCAA-GCCAGA  239
            |||||||||| ||||||||||||||||||||| ||||||| |||  ||| ||| ||||||
Sbjct  204  CTGCAGCGTAACAAAAGCGTTGAGACTAACATTCTTCAAAGTCTCATGA-CAAAGCCAGA  262

Query  240  TGATTCT  246
            | |||||
Sbjct  263  TCATTCT  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13672827728


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5