BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921726

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24580.1 | Symbols:  | RING/U-box superfamily protein | chr1...   595    1e-169


> AT1G24580.1 | Symbols:  | RING/U-box superfamily protein | chr1:8710180-8710824 
FORWARD LENGTH=645
Length=645

 Score =  595 bits (322),  Expect = 1e-169
 Identities = 399/433 (92%), Gaps = 17/433 (4%)
 Strand=Plus/Plus

Query  23   GGGTCTTTCGCATTTTCCGACAGCGTCAGAAGGAGTACTACCACTTCTGGTGATGAACAC  82
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GGGTCTCTCGCATTTTCCAACAGCGTCAGAAGGAGTACTACCACTTCTGGTGATGAACAC  60

Query  83   GGTTGTTTCAGTCACTCTGTTGAAGAACATGGTGAGGTCTGTTTTTCAAATTGTTGCATC  142
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGTTGTTTCAATCACTCTGTTGAAGAACATGGTGAGGTCTGTTTTTCAAATTGTTGCATC  120

Query  143  CGAGACTGAATCTTCCATGGAGATAGAAGACGAGCCTGAAGAGGATTTC-TTGAGGAGAA  201
            ||||||||||||||||||||||||||| |||||||||||||| |||||  || |  ||||
Sbjct  121  CGAGACTGAATCTTCCATGGAGATAGACGACGAGCCTGAAGATGATTTTGTT-ACTAGAA  179

Query  202  GAATCTCGATTACACACTTCAAGTCTCTATATGAGAACAGAGGagaagaagaagaagaag  261
            |||||||||| ||||| ||||||||||||| |||||||| || | | || |  |||||||
Sbjct  180  GAATCTCGATAACACAGTTCAAGTCTCTATGTGAGAACATAG-A-A-GA-G--GAAGAAG  233

Query  262  aagaagaagaagagagaGgtgtggagtgttgtgtgtgtctgtgtgGGTTTAAAGAGGAAG  321
            |||| ||| | | |     |||||||||||||||||| || |||||||||||||||||||
Sbjct  234  AAGA-GAA-A-G-G-----TGTGGAGTGTTGTGTGTGCCTTTGTGGGTTTAAAGAGGAAG  284

Query  322  AGGAAGTGAGTGAGTTGGTTTCTTGCAAGCATTTCTTCCACAGGGCTTGTCTAGACAACT  381
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  285  AGGAAGTGAGTGAGTTGGTTTCTTGCAAGCATTTCTTCCACAGAGCTTGTCTAGACAACT  344

Query  382  GGTTTGGTAATAACCACACCACATGTCCTCTTTGCAGGTCCATTCTCTAGTGGTGGAATC  441
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  345  GGTTTGGTAATAACCACACCACATGCCCTCTTTGCAGGTCCATTCTCTAGTGGTGGAATC  404

Query  442  TTGTTTCACACTT  454
            |||||| ||||||
Sbjct  405  TTGTTTTACACTT  417



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5