BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921729
Length=376
Score E
Sequences producing significant alignments: (Bits) Value
AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metac... 307 4e-83
> AT1G02170.1 | Symbols: LOL3, ATMCPB1, MCP1B, ATMC1, MC1 | metacaspase
1 | chr1:411779-413554 FORWARD LENGTH=1336
Length=1336
Score = 307 bits (166), Expect = 4e-83
Identities = 210/230 (91%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 99 GACCCTCGCTCCGCCCTTCCACCTCCACCTTCCTCCGCCTCTTCTCCGCCGACCCAAATC 158
||||||||| |||||| ||| || | ||||||||||||| |||||||||| ||||||||
Sbjct 243 GACCCTCGCACCGCCCCTCCTCCGCAACCTTCCTCCGCCCCTTCTCCGCCTCCCCAAATC 302
Query 159 CACGCCCCTCCCGGTCAGCTACCTCACCCCCATGGCAGGAAGAGGGCCGTGATC--T--- 213
||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 303 CACGCGCCTCCCGGTCAGCTGCCTCACCCCCATGGCAGGAAGAGGGCCGTGATCTGTGGC 362
Query 214 A--TGGTATCGTTTCTCTCACCACGAGCTCAAAGGCTGCATCAACGACGCCAAGTGCATG 271
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 363 ATCTCGTATCGTTTCTCTCGCCACGAGCTCAAAGGCTGCATCAACGACGCCAAGTGCATG 422
Query 272 CGTCACCTTCTCATCAACAAATTCAAGTTCTCCCCAGATTCAATTCTCAT 321
|||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 423 CGTCACCTTCTCATCAACAAATTCAAATTCTCCCCAGATTCAATTCTCAT 472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17694247648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5