BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921731
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT1G67800.2 | Symbols: | Copine (Calcium-dependent phospholipi... 937 0.0
> AT1G67800.2 | Symbols: | Copine (Calcium-dependent phospholipid-binding
protein) family | chr1:25420780-25423403 REVERSE
LENGTH=1717
Length=1717
Score = 937 bits (507), Expect = 0.0
Identities = 755/873 (86%), Gaps = 23/873 (3%)
Strand=Plus/Plus
Query 202 AGAAGAAGTTTTCACAGATCGGTGATTACTACCGTTCCATTGATGAGGTTACGGGTGCTC 261
||| ||||| ||||| ||| | |||| ||||||||||||||||||||||||| | |||||
Sbjct 357 AGAGGAAGTATTCACGGATTGCTGATAACTACCGTTCCATTGATGAGGTTACCGCTGCTC 416
Query 262 TTTCTCATGCTGGTTTGGAGTCATCGAATTTGATTGTTGGTATTGATGTCACTAAGAGCA 321
|||| ||||| ||||||||||| |||||| | ||||||||||| |||||||| |||||||
Sbjct 417 TTTCACATGCCGGTTTGGAGTCCTCGAATCTCATTGTTGGTATAGATGTCACCAAGAGCA 476
Query 322 ATGAGTGGACAGGAGCGAGCTCATTTAACAGGCAA-AGCT-TGCATTACATTGGAACAAC 379
| ||||||||||| ||||| |||||| ||| || || | |||||| ||||||||| ||
Sbjct 477 ACGAGTGGACAGGGGCGAGATCATTTGGTAGG-AAGAG-TCTGCATTTCATTGGAACTAC 534
Query 380 TCCAAACCCGTACCAGCAAGCGATTTCTATTATCGGAAAGACTTTATCCGCTTTCGATGA 439
||||||||| || || ||||| ||||| || || |||||||||||||| | ||| |||||
Sbjct 535 TCCAAACCCTTATCAACAAGCTATTTCCATCATTGGAAAGACTTTATCGGTTTTTGATGA 594
Query 440 GGATAATTTGATCCCTTGTTATGGTTTTGGAGATGCTACAACACATGATCAGAATGTCTT 499
||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 595 GGATAATTTGATCCCCTGTTATGGATTTGGAGATGCTACAACTCATGATCAGGATGTCTT 654
Query 500 CAGTTTCTATCCGGATGATACAT-TCTGTAATGGGTTTGAAGATGTCCTTTCA--CGTTA 556
||||||| |||| ||||||||| | ||||| ||||||||||| || | ||| ||||
Sbjct 655 CAGTTTCAATCCCAATGATACATAT-TGTAACGGGTTTGAAGAAGT--TCTCATGTGTTA 711
Query 557 CAGAGAGATTGTTCCTCAGCTGCATCT-TGCAGGGCCGACTTCTTTTGCACCCATCATCG 615
||||||||||||||| ||||| | ||| | |||| ||||| ||||||||||| |||||||
Sbjct 712 CAGAGAGATTGTTCCCCAGCTTCGTCTCT-CAGGTCCGACATCTTTTGCACCTATCATCG 770
Query 616 AAAGGGCCATGACAATCGTGGAAGAAAGTGGAGGACAGTACCATGTTCTTCTCATAATCG 675
|||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||
Sbjct 771 AAAGGGCCATGACAATTGTGGAAGAAAGTGGTGGCCAGTACCATGTTCTTCTCATTATCG 830
Query 676 CTGATGGACAGGTGACAAGAAGTGTTGATACCA-ATCAA-GGTGGCCTCAGCTC-ACAAG 732
||||||||||||||||||||||||||||||| | || || ||||| |||| || |||||
Sbjct 831 CTGATGGACAGGTGACAAGAAGTGTTGATAC-AGAT-AACGGTGGATTCAG-TCCACAAG 887
Query 733 AACAAAAGACCATTGATGCAATTGTTAGAGCTAGCGCATATCCTCTATCGATAGTTCTGG 792
| || |||| |||||||| ||||||||||| || | ||||||| | || |||||||| |
Sbjct 888 AGCAGCAGACTATTGATGCCATTGTTAGAGCAAGTGAATATCCTTTGTCTATAGTTCTTG 947
Query 793 TTGGTGTTGGAGATGGTCCTTGGGATACAATGAGACAGTTTGATGACAACATCCCTGCTC 852
||||||||||||||||||| ||||| || |||||||||||||||||||||||||| ||||
Sbjct 948 TTGGTGTTGGAGATGGTCCCTGGGACACCATGAGACAGTTTGATGACAACATCCCCGCTC 1007
Query 853 GTGCCTTTGACAATTTTCAATTTGTGAATTTCACGGAGATTATGGCAAAGAACATTGATC 912
|||||||||||||||| || ||||||||||||||||| || ||| |||||||||||||||
Sbjct 1008 GTGCCTTTGACAATTTCCAGTTTGTGAATTTCACGGATATAATGTCAAAGAACATTGATC 1067
Query 913 CTGGAAGAAAAGAAGCAGAATTTGCACTTTCCGCCTTGATGGAGATCCCGTCTCAGTATA 972
| | ||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||
Sbjct 1068 CAGCAAGAAAAGAGGCAGAATTCGCGCTTTCTGCCTTGATGGAGATCCCGTCTCAGTATA 1127
Query 973 AGGCCACCCTCGAGCTCGGCTTACTCGGA-AGAAGAACAGGAAAGTCTCCAAACAAGATT 1031
| ||||||||||| || |||||||| ||| | |||||| ||| | | |||| ||| ||||
Sbjct 1128 AAGCCACCCTCGAACTAGGCTTACTTGGACA-AAGAACCGGACATTGTCCAGACAGGATT 1186
Query 1032 GCTCTTCCACCACCAA-TCAGTGCTACT-AATC 1062
|| ||||||||||||| | | ||||||| ||||
Sbjct 1187 GCGCTTCCACCACCAACTTA-TGCTACTCAATC 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5