BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921733
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24530.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2073 0.0
> AT1G24530.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:8693227-8694705 FORWARD LENGTH=1479
Length=1479
Score = 2073 bits (1122), Expect = 0.0
Identities = 1240/1298 (96%), Gaps = 3/1298 (0%)
Strand=Plus/Plus
Query 3 TTACCAAACATCG-AA--ACCATGAGGGTTATCTCAAAGCTGTTCGATTCCGACAGAAGA 59
||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 40 TTACCAAACATCGAAACCACCATGAGGGTTATCTCAAAACTGTTCGATTCCGACAGAAGA 99
Query 60 CGAACACCGAAATCGCCGAAGCATTTGGATTCCGACGAAAGCTTCACGTTATCTTCATCA 119
|||| ||| ||||||||||||||||||||||||| ||||||| ||||| |||||| |||
Sbjct 100 CGAATACCCAAATCGCCGAAGCATTTGGATTCCGGCGAAAGCGCCACGTCATCTTCCTCA 159
Query 120 CTCAGCGACGTAACCACCGGCTCAAGCAGCCTCCATAGCAGTCTCTCTCTCCAGACGCTT 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 160 CTCAGCGACGTAACCACCGGCTCAAGCAGCCTTCATAGCAGTCTCTCTCTCCAAACGCTT 219
Query 180 CCTTCAGTTCCTTCTCTTCAGAAAATCCCATCCACCACCGTCACCGTCTCTCACTCCGTT 239
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 CCTTCAGTTCCCTCTCTTCAGAAAATCCCATCCACCACCGTCACCGTCTCTCACTCCGTT 279
Query 240 ACCTCCTCGTTTAAACTCCGTGAACGAAGTCTTCCTGTAACTTGTCTCGCCGTCAACGGT 299
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 280 ACCTCCTCGTTTAAACTCCGTGAACGGAGTCTTCCTGTAACTTGTCTCGCCGTCAATGGT 339
Query 300 GGCTATCTCTTTGCCGTTTCTGGACATGAAGTTAGTATCTACGATCGCGACATGTGTGCT 359
|| || ||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 340 GGTTACCTCTTCGCCGTGTCTGGACACGAAGTAAGTATCTACGATCGCGACATGTGTGCT 399
Query 360 CATCTAGACACATTCAACGGCCAAGATCCTTTCTCAGGAACCGTTAAGTCCGTCGGCTTC 419
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 400 CATCTCGACACATTCAACGGCCAAGATCCTTTCTCAGGAACCGTGAAGTCCGTCGGCTTC 459
Query 420 TCCGGTGAGAAAATTTTCACGGCGCATCAAGACGGTAAAATCGGAGTTTGGAAACTAACG 479
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 460 TCCGGTGAGAAAATCTTCACGGCGCATCAAGACGGTAAAATCGGAGTTTGGAAACTTACG 519
Query 480 GCGAAGAGCGGTTATAAACAGTTAACGACGCTTCCTACTTTAAACGACCGTTTACGACGT 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GCGAAAAGCGGTTATAAACAGTTAACGACGCTTCCTACTTTAAACGACCGTTTACGACGT 579
Query 540 TTCGCTCTTCCCAAAAACTACGTTCAAGTACGCCGTCATAAGAAACGTCTCTGGATCGAA 599
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTCGCTCTTCCTAAAAACTACGTTCAAGTACGCCGTCATAAGAAACGTCTCTGGATCGAA 639
Query 600 CATGCTGACGCCGTTACTGCTCTTGCCGTTAATAACGGATTTATTTACTCTGTTTCTTGG 659
||||||||||||||||||||||| ||||||| | ||||||| ||||||||||||||||||
Sbjct 640 CATGCTGACGCCGTTACTGCTCTCGCCGTTAGTGACGGATTCATTTACTCTGTTTCTTGG 699
Query 660 GATAAGACCTTGAAGATATGGAGAGCCTCTGATCTTCGTTGCAAAGAGTCAATCAAAGCA 719
|||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 700 GATAAGACTTTGAAGATATGGAGAGCCTCCGATCTTCGTTGCAAAGAATCAATCAAAGCT 759
Query 720 CACGATGACGCCGTTAATGCCGTCGCCGTCTCTACTAACGGCACCGTTTATACTGGATCC 779
||||||||||||||||||||| | ||||| |||||||||||||||||||| |||||||||
Sbjct 760 CACGATGACGCCGTTAATGCCATTGCCGTTTCTACTAACGGCACCGTTTACACTGGATCC 819
Query 780 GCAGATAGACGTATCCGGGTGTGGGCCAAACCGACCGGTGAGAAACGTCACACGTTAGTC 839
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 820 GCGGATAGACGTATCCGGGTTTGGGCCAAACCGACCGGTGAGAAACGTCACACGTTAGTT 879
Query 840 GCGACTTTGGAAAAGCATAAATCGGCGGTTAACGCATTGGCATTAAACGACGACGGATCG 899
|||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 880 GCGACTTTAGAGAAGCACAAATCGGCGGTTAACGCATTAGCATTAAACGACGACGGATCG 939
Query 900 GTTTTATTCTCCGGTTCGTGTGACCGGTCTATTTTGGTTTGGGAGAGAGAAGACACTTCC 959
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 940 GTTTTGTTCTCCGGTTCGTGTGACCGGTCTATTTTGGTTTGGGAGAGAGAGGATACTTCC 999
Query 960 AATTACATGGCGGTGAGAGGTGCTTTGAGGGGACATGATAAAGCAATACTTAGCTTGTTC 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1000 AATTACATGGCGGTGAGAGGTGCGTTGAGGGGACATGATAAAGCAATACTTAGCTTGTTC 1059
Query 1020 AACGTCTCTGATTTGCTACTAAGTGGATCAGCTGATCGGACGGTCAGAATTTGGCGACGT 1079
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1060 AACGTCTCTGATTTGCTACTCAGTGGATCAGCTGATCGGACGGTCAGGATTTGGCGACGT 1119
Query 1080 GGACCGGATTCTAGTTATAGTTGTTTGGAGGTTCTTTCCGGTCATACGAAGCCGGTTAAG 1139
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1120 GGACCCGATTCTAGTTATAGTTGTTTGGAGGTTCTTTCCGGTCATACCAAGCCGGTTAAG 1179
Query 1140 TCGTTGGCGGCGGTTAGAGAAAAGGAGTTAGACGATGTCGTTTCGATCGTTAGTGGAAGT 1199
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1180 TCGTTGGCGGCGGTTAGAGAAAAGGAGTTAGACGATGTCGTTTCGATCATTAGTGGAAGT 1239
Query 1200 CTTGACGGAGAGGTTAAATGTTGGAAGGTGTCCGTCACCAAACCGGATAATTCATTTTAC 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 CTTGACGGAGAGGTTAAATGTTGGAAGGTGTCCGTCACCAAACCGGATAATTCATTTTAC 1299
Query 1260 ACGAATCTCGTTCAATAAATTAATGGGATTAATTTGTT 1297
|||||||||||||||||||||| ||| |||||||||||
Sbjct 1300 ACGAATCTCGTTCAATAAATTAGTGGCATTAATTTGTT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63804892695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5